Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B24
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    73   5e-14
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    26   6.2  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   6.2  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   8.2  

>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 27/61 (44%), Positives = 37/61 (60%)
 Frame = +2

Query: 173 LDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWVDACE 352
           LD  F C FCNHEKS    +D+      + C++C +  Q     LS PIDVY+DW+DAC+
Sbjct: 19  LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACD 78

Query: 353 S 355
           +
Sbjct: 79  A 79


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/70 (18%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 72  LNIRLLFLDLNQQQVWDVENQKGSHHQNERLPRHWISNLTVRFAIMKNPAK*KWIAQGI- 248
           +N  ++FL +N  +++    Q+  +       ++W++ +     + KNP+K   + + + 
Sbjct: 306 VNTTVVFLPVNSTEIYHPCGQEIVYAFKSYYRKYWLNYMLEEIRLGKNPSKTMNVLKAVR 365

Query: 249 --LREYSVEF 272
             +R ++V+F
Sbjct: 366 WMIRSWNVDF 375


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = +2

Query: 191 CPFCNHEKSCEVKMDRARNTARIQCRVC---LEDFQTTTNVLS 310
           CPFCN + S    +    N     C VC   L+D + +  ++S
Sbjct: 138 CPFCNKKFSSLDVLSLVTNEGTFACNVCGTELKDDEESAEMMS 180


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +2

Query: 191 CPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTT 295
           CPFC  EK    +M R      + C  CL  F  T
Sbjct: 214 CPFCLEEKPVAARMSRC---GHVYCFSCLLRFVET 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,723,936
Number of Sequences: 5004
Number of extensions: 44328
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)