Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B24
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-10|CAA22454.1|   84|Caenorhabditis elegans Hypothetical...   116   3e-26
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr...    29   5.9  

>AL034488-10|CAA22454.1|   84|Caenorhabditis elegans Hypothetical
           protein Y54G11A.11 protein.
          Length = 84

 Score =  116 bits (278), Expect = 3e-26
 Identities = 49/67 (73%), Positives = 52/67 (77%)
 Frame = +2

Query: 161 ATEALDQQFNCPFCNHEKSCEVKMDRARNTARIQCRVCLEDFQTTTNVLSEPIDVYNDWV 340
           A   LD QFNCPFCNHE+ CEVKMDR +N   I CRVC EDFQT  N LSEPIDVY+DWV
Sbjct: 16  AVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWV 75

Query: 341 DACESAN 361
           DACE AN
Sbjct: 76  DACEQAN 82


>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
           protein T01E8.3 protein.
          Length = 1299

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  FLDLNQQQVWDVENQKGSHHQNERLPRHWISN 185
           FL   +  +WD  N+K +H  +  L  +WI++
Sbjct: 283 FLFSRENSLWDPTNEKVTHDMSRPLSHYWIAS 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,345
Number of Sequences: 27780
Number of extensions: 255559
Number of successful extensions: 680
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)