Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B23
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    36   0.010
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   4.7  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   6.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   8.2  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = +1

Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKT 351
           M+RGNQRD+ RA+N KK  +  KKK A + T
Sbjct: 1   MSRGNQRDVDRARNLKKS-QASKKKQAGDPT 30


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 289 RAKNQKKQVEMQKKKNASEKTGLSLQ 366
           +AKN+KK+ + QKKK  + K  L  Q
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKRDLDNQ 120


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 73  VLYTLII--AKSFFPILLLLVKWRAVRCPRSRP 165
           VL T++I    +FFPI+L  + W  +R  R  P
Sbjct: 566 VLGTILIFLGNTFFPIMLRFIIWIMIRTTRFSP 598


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 654 LNYML*KRS*VETENDLNIKKWCEDCHNHICI--SIYANL 767
           +NY    +   + EN++ I+++ E CH   C    IY N+
Sbjct: 172 INYSEPLKESQKKENEVRIQEFVESCHGQYCTFQQIYNNI 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,768
Number of Sequences: 5004
Number of extensions: 55409
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)