Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B23
         (883 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical ...    48   9e-06
AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      33   0.36 
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    33   0.36 
AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical ...    30   2.5  
Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched fami...    28   7.7  
U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AC087079-3|AAK27862.1|   82|Caenorhabditis elegans Hypothetical
           protein Y37E3.4 protein.
          Length = 82

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = +1

Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEK---TGLSLQERKHRXC*INARKTTKKRGRV 429
           MTRGNQRDLAR KNQKK  + +K++ AS +    GLS+  R +R   +   K  K   + 
Sbjct: 1   MTRGNQRDLAREKNQKKLADQKKRQGASGQDGNAGLSMDARMNRDADVMRIKQEKAAAKK 60

Query: 430 SSKETS*ASS 459
            ++  + A++
Sbjct: 61  EAEAAAAAAN 70


>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 280 DLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRXC*INARKTTKKRGRVSSK 438
           D  R +  KK+ +  KK+ +SE +  S +ERK +    N  K+ KKR   S +
Sbjct: 133 DEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEE 185


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 280 DLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRXC*INARKTTKKRGRVSSK 438
           D  R +  KK+ +  KK+ +SE +  S +ERK +    N  K+ KKR   S +
Sbjct: 133 DEEREQKSKKKSKKTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEE 185


>AL033514-7|CAA22114.1|  648|Caenorhabditis elegans Hypothetical
           protein Y75B8A.7 protein.
          Length = 648

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +1

Query: 262 TRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 381
           +R    +  +   +KK++E  KK+ A +K  LSL + K++
Sbjct: 246 SRETVAETEKMNGEKKKIEKDKKRKAGDKADLSLDDGKNK 285


>Z48006-3|CAB62803.1|  449|Caenorhabditis elegans Hypothetical
           protein F19C6.2b protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 268 GNQRDLARAKNQKKQVEMQKKKNASEK 348
           GN+ D + AK  KKQV  +KK+NA  K
Sbjct: 301 GNEDDSSNAKYAKKQVFKKKKRNAFGK 327


>Z48006-2|CAA88050.1|  495|Caenorhabditis elegans Hypothetical
           protein F19C6.2a protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 268 GNQRDLARAKNQKKQVEMQKKKNASEK 348
           GN+ D + AK  KKQV  +KK+NA  K
Sbjct: 347 GNEDDSSNAKYAKKQVFKKKKRNAFGK 373


>U50308-6|AAG24025.2|  936|Caenorhabditis elegans Dispatched family
           protein 2 protein.
          Length = 936

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 64  VAFVLYTLIIAKSFFPILLLLV 129
           VAF +YT+++   FFP + LLV
Sbjct: 361 VAFFIYTVVLGIDFFPFINLLV 382


>U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical
           protein C18B2.2 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 253 IRMTRGNQRDLARAKNQKKQVE-MQKKKNASEKTGLSL 363
           + M+  ++  L R  N  + ++ +QKK NASE TG SL
Sbjct: 148 MNMSEWDKESLCRGDNTFRHLKSLQKKYNASEMTGWSL 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,073,389
Number of Sequences: 27780
Number of extensions: 304914
Number of successful extensions: 740
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)