Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B22
(898 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 109 2e-24
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 108 5e-24
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 108 7e-24
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 107 1e-23
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 32 0.54
09_02_0251 - 6282420-6282526,6282642-6283104,6283223-6283289,628... 29 5.0
03_05_0496 - 24920645-24920655,24921388-24921547,24921788-249218... 29 5.0
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 109 bits (263), Expect = 2e-24
Identities = 55/113 (48%), Positives = 69/113 (61%)
Frame = +2
Query: 134 ALXAVLQSSKDKXRNFLEXVXLQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQ 313
A+ V+ SK+K R F E V LQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD Q
Sbjct: 30 AISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQ 89
Query: 314 HCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 472
H +EA+ + + M SE++IKQIPR +G
Sbjct: 90 HVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 142
Score = 83.0 bits (196), Expect = 3e-16
Identities = 37/72 (51%), Positives = 53/72 (73%)
Frame = +3
Query: 453 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 632
+ P LLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +
Sbjct: 136 QIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 190
Query: 633 LAQNVHLSINFL 668
+ QN+ +S+NFL
Sbjct: 191 IQQNIQMSVNFL 202
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +1
Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
LVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 202 LVSLLKKNWQNVRCLYIKSTMGKPIRVF 229
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 108 bits (260), Expect = 5e-24
Identities = 52/113 (46%), Positives = 69/113 (61%)
Frame = +2
Query: 134 ALXAVLQSSKDKXRNFLEXVXLQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQ 313
A+ + S++K R F+E + LQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD Q
Sbjct: 12 AISQITSESREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQ 71
Query: 314 HCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 472
H +EA+ + + M SE++IKQIPR +G
Sbjct: 72 HVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
Score = 81.0 bits (191), Expect = 1e-15
Identities = 34/63 (53%), Positives = 49/63 (77%)
Frame = +3
Query: 480 LNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSI 659
++K GKFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+ M ++ QNV +S+
Sbjct: 149 VSKRGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQIFQNVQMSV 208
Query: 660 NFL 668
NFL
Sbjct: 209 NFL 211
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +1
Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
LVSLLKK+WQNVR L++KSTMG R++
Sbjct: 211 LVSLLKKNWQNVRCLYLKSTMGKVIRVF 238
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 108 bits (259), Expect = 7e-24
Identities = 54/113 (47%), Positives = 68/113 (60%)
Frame = +2
Query: 134 ALXAVLQSSKDKXRNFLEXVXLQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQ 313
A+ V+ K+K R F E V LQIGLKNYDPQKDKRFSG+VKL +IPRPKM+VC+LGD Q
Sbjct: 12 AISQVVADCKEKNRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQ 71
Query: 314 HCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 472
H +EA+ + + M SE++IKQIPR +G
Sbjct: 72 HVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
Score = 83.0 bits (196), Expect = 3e-16
Identities = 37/72 (51%), Positives = 53/72 (73%)
Frame = +3
Query: 453 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 632
+ P LLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG++ M +
Sbjct: 118 QIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQ 172
Query: 633 LAQNVHLSINFL 668
+ QN+ +S+NFL
Sbjct: 173 IQQNIQMSVNFL 184
Score = 47.2 bits (107), Expect = 2e-05
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = +1
Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
LVSLLKK+WQNVR L++KSTMG P R++
Sbjct: 184 LVSLLKKNWQNVRCLYIKSTMGKPYRVF 211
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 107 bits (257), Expect = 1e-23
Identities = 51/113 (45%), Positives = 69/113 (61%)
Frame = +2
Query: 134 ALXAVLQSSKDKXRNFLEXVXLQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQ 313
A+ + S++K R F+E + LQIGLKNYDPQKDKRFSG+VKL +IPRPK++VC+LGD Q
Sbjct: 12 AISQIANDSREKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKLKVCMLGDAQ 71
Query: 314 HCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 472
H +EA+ + + M SE++IKQIPR +G
Sbjct: 72 HVEEAEKMGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPRLLG 124
Score = 81.4 bits (192), Expect = 9e-16
Identities = 38/72 (52%), Positives = 52/72 (72%)
Frame = +3
Query: 453 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 632
+ P LLGPG KFP L++HQES+ K++E K T+KFQ+KKVLC+ VAVG+ M +
Sbjct: 118 QIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQ 172
Query: 633 LAQNVHLSINFL 668
+ QNV +S+NFL
Sbjct: 173 IFQNVQMSVNFL 184
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +1
Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
LVSLLKK+WQNVR L++KSTMG R++
Sbjct: 184 LVSLLKKNWQNVRCLYLKSTMGKVYRVF 211
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 32.3 bits (70), Expect = 0.54
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 137 LXAVLQSSKDKX-RNFLEXVXLQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVCVLGDQ 310
L + LQS K K R +E + D + K + +K + PK +VCV D
Sbjct: 261 LKSTLQSGKHKGLRRCIEEIVFSYTYPRLDMEVSKHMNHLLKAPFCIHPKTGRVCVPIDP 320
Query: 311 QHCDEAKTLNVPCM 352
+CD+ VP +
Sbjct: 321 NNCDDFDPTTVPTL 334
>09_02_0251 -
6282420-6282526,6282642-6283104,6283223-6283289,
6283536-6283808,6284096-6284907,6285402-6285479,
6285586-6285636,6285737-6285817,6285903-6285982,
6288481-6288652
Length = 727
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 582 PSSFGT*WFP*LHQSSASWTPGGREDQGIYQLCSNRDPTK 463
P F WFP +H ++ S R Q I+ +C N+ P K
Sbjct: 493 PVYFKNDWFPFIHSTTLSEGTNARRRQDIFGVCCNK-PNK 531
>03_05_0496 -
24920645-24920655,24921388-24921547,24921788-24921828,
24922029-24922521,24923503-24923616,24925728-24925955,
24926405-24926650,24927690-24927831,24929263-24929354
Length = 508
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = -1
Query: 166 VLRGLKNGXQRTRRAXH-----ETLXTTFCLSENQPSTTLGSCKSK 44
V L NG + + H + +F S N PST+LGSCK K
Sbjct: 347 VSSALSNGSNKKKGINHKKSYSDVTCASFGRSPNIPSTSLGSCKQK 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,452,891
Number of Sequences: 37544
Number of extensions: 411419
Number of successful extensions: 1000
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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