Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B22
         (898 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   113   1e-25
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   107   1e-23
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   107   1e-23
Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical pr...    35   0.069
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    30   2.6  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  113 bits (273), Expect = 1e-25
 Identities = 56/113 (49%), Positives = 68/113 (60%)
 Frame = +2

Query: 134 ALXAVLQSSKDKXRNFLEXVXLQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQ 313
           A+  VL+ S +K R F E + LQIGLKNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ 
Sbjct: 12  AIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQH 71

Query: 314 HCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 472
           H DEA   ++P M                           SESLIKQIPR +G
Sbjct: 72  HLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILG 124



 Score =  107 bits (257), Expect = 1e-23
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +3

Query: 453 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 632
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177

Query: 633 LAQNVHLSINFL 668
           L  N+ LSINFL
Sbjct: 178 LVSNISLSINFL 189



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 23/28 (82%), Positives = 27/28 (96%)
 Frame = +1

Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
           LVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 189 LVSLLKKNWQNVRSLNIKSTMGKPQRVY 216


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  107 bits (257), Expect = 1e-23
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +3

Query: 453 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 632
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 88  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 147

Query: 633 LAQNVHLSINFL 668
           L  N+ LSINFL
Sbjct: 148 LVSNISLSINFL 159



 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 43/87 (49%), Positives = 51/87 (58%)
 Frame = +2

Query: 212 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 391
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 392 XXXXXXXXXXXXXXSESLIKQIPRFVG 472
                         SESLIKQIPR +G
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILG 94



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 23/28 (82%), Positives = 27/28 (96%)
 Frame = +1

Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
           LVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 159 LVSLLKKNWQNVRSLNIKSTMGKPQRVY 186


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  107 bits (257), Expect = 1e-23
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +3

Query: 453 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 632
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 57  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116

Query: 633 LAQNVHLSINFL 668
           L  N+ LSINFL
Sbjct: 117 LVSNISLSINFL 128



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 23/28 (82%), Positives = 27/28 (96%)
 Frame = +1

Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
           LVSLLKK+WQNVRSL++KSTMG PQR+Y
Sbjct: 128 LVSLLKKNWQNVRSLNIKSTMGKPQRVY 155



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 28/63 (44%)
 Frame = +2

Query: 284 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 463
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 464 FVG 472
            +G
Sbjct: 61  ILG 63


>Z81576-2|CAB04644.1|  522|Caenorhabditis elegans Hypothetical
           protein R10E8.3 protein.
          Length = 522

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = -3

Query: 680 SSDTKEVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEK 507
           S +T   D + + L K+    + + + +R    + HLEL GS  L+FI LL    L  +K
Sbjct: 322 SFETFHCDFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKK 378

Query: 506 TREFTSFVQTGTQQNGESA 450
            R+ T F   G   NG  A
Sbjct: 379 LRKLTIFATVGDVNNGNQA 397


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 692 QCFLSS--DTKEVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLLRHGLL 519
           QC  SS  D K    + H+L +L++  V      R+T HLL   L  S +++ LLR   +
Sbjct: 532 QCVDSSPDDVKIALQRTHVLVELVKGFVQ-----RRTHHLLKKILPESKEYVLLLRKSQI 586

Query: 518 VGEKTREFTSFVQTGTQQNGES 453
             +  R F  + +     N ++
Sbjct: 587 QRQLYRNFVLWAKNEIAANNDA 608


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,551,656
Number of Sequences: 27780
Number of extensions: 360276
Number of successful extensions: 812
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)