Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B22
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.2  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   6.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 480 LNKAGKFPGLLSHQE 524
           LNK GK P L++H+E
Sbjct: 573 LNKIGKNPNLVAHRE 587


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 480 LNKAGKFPGLLSHQE 524
           LNK GK P L++H+E
Sbjct: 541 LNKIGKNPNLVAHRE 555


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 766 LLC*ISTISGVVPSLISYAMIGHSASV 686
           L+C  S   G  PS +S  MI  +ASV
Sbjct: 14  LICSPSVHCGTRPSFVSDEMIATAASV 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,346
Number of Sequences: 438
Number of extensions: 4229
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)