Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B21
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165     30   2.9  
06_03_0218 + 18219956-18220555                                         30   2.9  
11_04_0454 - 17895935-17896093,17896878-17896911,17897114-178972...    29   3.8  
08_01_0891 + 8775537-8776127,8776403-8776513                           29   5.0  
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817           29   6.6  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.6  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.7  
09_01_0140 + 2083885-2083969,2084178-2084653                           28   8.7  

>08_02_1006 - 23484861-23485409,23486327-23486488,23486584-23487165
          Length = 430

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 642 SRGKRLVSL*SCRVSPPLT*ASIFVMLVQGGGAYGKTPAT 523
           SRGK L+S  + R  PP   + + V+ + GGG  G  P T
Sbjct: 25  SRGKSLLSPSTPRSPPPSYGSIVTVLSIDGGGVRGIIPGT 64


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = -2

Query: 720 SRXRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 619
           +R RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 104 ARARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>11_04_0454 -
           17895935-17896093,17896878-17896911,17897114-17897252,
           17897487-17897561,17897666-17897945
          Length = 228

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 741 AMRKRHASRXRREKGGQVSGKRQG 670
           A R+RH  R RR +GGQ +  R+G
Sbjct: 26  ARRRRHHQRHRRRRGGQPAPNRRG 49


>08_01_0891 + 8775537-8776127,8776403-8776513
          Length = 233

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 606 DRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGNV 719
           D      G +PW+L R+LSC    A  +    +P+ N+
Sbjct: 164 DAAAAAAGWAPWRLIRSLSCKGIEAVAVAAAAAPYHNL 201


>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
          Length = 883

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/68 (32%), Positives = 27/68 (39%)
 Frame = +2

Query: 635 PLEAPSCALLFRPCRLPDTCPPFSLRXREAWRFLIAHAVGSSVRCXSXXPXWXWVXXPPV 814
           PL   S A   R  R+P T PP + R R       A A  +     S  P W  +  PP 
Sbjct: 722 PLSLRSPAPHLRARRVP-TAPPAAARPRAPTPPAAAAAPAAPPAPPSGLPSWPLLVRPPT 780

Query: 815 QPDRXXLS 838
            P R  L+
Sbjct: 781 GPARARLA 788


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 358 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 513
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 307 NESAN---ARGEAVCVLGALPLPRSLTRCAR 390
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>09_01_0140 + 2083885-2083969,2084178-2084653
          Length = 186

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 768 HRTEEPTA*AMRKRHASRXRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL 616
           H TEE  A   R++H +     +    +G+R         GAS G RL  L
Sbjct: 92  HPTEEAVAGPRRRQHPAPMGARRAVTNAGRRSSHRLNTSRGASDGGRLSPL 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,417,077
Number of Sequences: 37544
Number of extensions: 444167
Number of successful extensions: 1361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)