Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B19
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 32 0.089
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 29 0.83
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 28 1.4
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 28 1.9
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0... 27 3.3
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 4.4
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 5.8
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 26 5.8
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 7.7
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 7.7
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 7.7
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 7.7
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 32.3 bits (70), Expect = 0.089
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Frame = +1
Query: 43 LNSQTELWCQKQLLTV*ISGLGQNMAHVQFVDELVREY--LLFR--GFASTLKAFDNDLK 210
L + L CQK + + IS + ++F + L+R+Y LFR F++++ + +K
Sbjct: 359 LQEEISLLCQKMMYNLAISLAKKENMDIEFRESLMRDYASFLFRRGDFSASMDWYIRSIK 418
Query: 211 ADKDKG----FRVDKIIEQIMHFINVSDLNGLKEYWSHLDSLIFTKLEIHVQPAIRKL 372
+ F + I+Q++ + GL H L+ +EIH P+IRKL
Sbjct: 419 SIDIPSVCLEFLKAQEIKQLIRLLEELIKTGLATS-DHRLLLLSCYVEIHDSPSIRKL 475
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.1 bits (62), Expect = 0.83
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 353 CTCISNFVKIRESKCDQYSFKPLRSETLMK 264
C ++ + S+C +Y FKPL +E ++K
Sbjct: 160 CNYMTRIIDPLSSRCSKYRFKPLDNENMVK 189
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3
Query: 266 KCIICSIILSTLKPLSLSAFKSLSNAFRVLAKPLNNKYSLT---NSSTNC 126
KC++C+IIL PL + +++ NA + +NK LT N T C
Sbjct: 109 KCLVCNIILDIQDPLLSLSLEAMKNATKA-----SNKSQLTAWENELTTC 153
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 400 VTAAQNTSLIRNEKITDFFNKMLPELQGQNEWKEWFTFPYIQKPE--ENPSF 549
V+ ++T ++ +F LP+++ EW +WF F + + E +NP F
Sbjct: 27 VSKKEDTEPEVRDEAKEFLLSQLPQVEVP-EWAQWFDFSKVHEIEKKQNPEF 77
>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
Q0080|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 48
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -1
Query: 472 LATFY*RNLLSFHFLLNWYSVQLSLSTVYI 383
L FY N+LSF FL+ ++V L +S+VY+
Sbjct: 4 LVPFYFINILSFGFLI--FTVLLYISSVYV 31
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 26.6 bits (56), Expect = 4.4
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 REYLLFRGFASTLKAFDNDLKADKDKGFRVDKIIEQI-MHFINVSDLNGLKEYWSHLDSL 324
RE LL GF ++AFD+ + + GFR + I E I HF +V + +Y S + SL
Sbjct: 854 REILLENGFQKFVQAFDDMESSREGLGFR-ELIPEDIRAHFEDVGLPGDIADY-SPISSL 911
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.8
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +1
Query: 262 HFINVSDLNGLKEYWSHLDSLIFTKLEIHV-QPAIRKLEYSLYKLYLVTAAQNTSLIRN- 435
H IN++D ++ + S + +E+ + Q A R +E L A ++ N
Sbjct: 218 HSINLNDAETMQRHLDMRFSQLNVAVELELWQEAFRSIEDIHSLLTFSKRAPAAVMLGNY 277
Query: 436 -EKITDFFNKMLPELQGQNEWKEWFTFPYIQKP 531
K+ F L W +FTF +QKP
Sbjct: 278 YRKLIKIFLVCDNYLLHAAAWNRYFTFTNVQKP 310
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 127 QFVDELVREYLLFRGFASTLKAF 195
+F++EL+ +LL GF T K F
Sbjct: 266 EFLNELISSFLLNNGFVETAKKF 288
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 571 WQDSVLVSLHNLLATVFQCMPQPTLTSYESDAILV 675
W+D + V ++LL T+FQ P P + + AI +
Sbjct: 41 WKDRMSVKTNSLLQTLFQ-TPLPNANIWSNQAIRI 74
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 7.7
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -3
Query: 563 VKYKLNEGFSSGFWM*GNVNHSFHSFCPCNSGNILLKKSVIFSFLIKLVFCAAVTKYS-- 390
VK + E F++GF + G ++HS + N +L S +F ++K + V ++
Sbjct: 517 VKIEYTEDFATGFAISGEISHSIN-----NLEFVLYSLSSLFLMMLKWFRLSHVLRFERL 571
Query: 389 LYKLYSN 369
+ LY N
Sbjct: 572 AFLLYEN 578
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 278 ETLMKCIICSIILSTLKPLSLSAFKSLSNAFRVLAKPLNNKYSLTNSSTNCTCAIF 111
ET+++CI+ ++I+S LS L L + +N + SL + + C ++
Sbjct: 29 ETMLQCILEAVIVSKDAKQVLSLLHELKLFENFLWQRVNTEMSLNHINLTCMLLLY 84
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 7.7
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +1
Query: 271 NVSDLNGLKEYWSHLDSLIFTKLEIHVQPAIRKLEYSLYKLYLVT---AAQNTSLIRNEK 441
N S + +K S++ S I H Q + + ++ K +L+ + + L N+
Sbjct: 250 NTSSIFQVKNEMSNIKSAISEGYIAHDQQSKKVSVQNIKKEFLIPFEFSLEGGFLNYNKT 309
Query: 442 ITDFFNKMLPELQGQNEWKEWFTFPYIQK 528
++ + K+L E + + K WFTF + K
Sbjct: 310 FSNLY-KVLSETEKTRDSKVWFTFRLVLK 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,691
Number of Sequences: 5004
Number of extensions: 64262
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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