Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B19
(847 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 76 3e-14
12_01_0489 + 3872495-3872538,3872663-3872741,3872835-3872914,387... 31 1.5
08_01_0014 + 102100-102455,102543-102900 29 4.7
10_06_0018 - 9674771-9674995,9675079-9675126,9675471-9675530,967... 28 8.1
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 28 8.1
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 28 8.1
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 76.2 bits (179), Expect = 3e-14
Identities = 40/133 (30%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Frame = +1
Query: 115 MAHVQFVDELVREYLLFRGFASTLKAFDNDLKADKDKGFRVDKIIEQIMH-FINVSDLNG 291
M ++Q+ +ELV+E+L+FRGF STL++++++L + + F+VDKI++ + +I L+
Sbjct: 1 MENMQYAEELVKEFLVFRGFTSTLQSYESELSTEIGRNFQVDKILDLVFSVYIPKYQLDR 60
Query: 292 LKEYWSHLDSLIFTKLEIHVQPAIRKLEYSLYKLYLVTAAQNTSLIRNEKITDFFNKMLP 471
L+ ++ + + + A+ KLE S+ + Y+V A ++ R +K+ +FF
Sbjct: 61 LQGLFTFFKQCFTSPADAELFSALIKLELSVLRYYVVNALKSG---RQDKVVEFFGANGN 117
Query: 472 E-LQGQNEWKEWF 507
LQ + +W+ WF
Sbjct: 118 YLLQKREDWQAWF 130
>12_01_0489 +
3872495-3872538,3872663-3872741,3872835-3872914,
3873888-3874007,3874090-3874159,3874238-3874311,
3874393-3874513,3874600-3874662,3874748-3874807,
3875156-3875281,3875358-3875441,3875912-3876010
Length = 339
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -3
Query: 353 CTCISNFVKIRESKCDQYSFKPLRSETLMKCI--ICSIILSTLKPLSLSAFKSLSN 192
C IS ++ S+C ++ FKPL E + I IC+ +L +L+ ++SN
Sbjct: 151 CNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATLSTISN 206
>08_01_0014 + 102100-102455,102543-102900
Length = 237
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = -3
Query: 590 TSTLSCHALVKYKLNEGFSSGFWM*GNVNHSFHSFCPCNSGNILLKKSVIFSFLIKLVFC 411
T+ S A + Y +EG W+ + FH FC SG ++ +F ++ +V
Sbjct: 167 TAAASAAAAMVYVAHEGNLRANWV--PICLQFHGFCQRTSGAVIASFLAVFVLMVLIVMA 224
Query: 410 A 408
A
Sbjct: 225 A 225
>10_06_0018 -
9674771-9674995,9675079-9675126,9675471-9675530,
9675693-9675758,9675844-9675906,9675985-9676032,
9676150-9676215,9676493-9676558,9676660-9676725,
9676822-9676887,9676975-9677058,9677310-9677654,
9677738-9677833,9678129-9678332,9678434-9678726,
9678833-9678958,9679217-9679226
Length = 643
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 215 SAFKSLSNAFRVLAKPLNNKYSLTNSSTNCTCAIF 111
SA+K+ N R L +P NKYS + C F
Sbjct: 449 SAYKNKENLTRKLVRPSLNKYSTASKKRQCNTMDF 483
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 163 FRGFASTLKAFDNDLKADKDKGFRVDKIIEQIMHFINVSDLNGL 294
++ L + N LKA+ F + K+ QI FINV N L
Sbjct: 1258 WQSIVKILTNYLNVLKANYVPSFLISKVFTQIFSFINVQLFNSL 1301
>01_07_0298 -
42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 514 PYIQKPEENPSFSLYFTRAWQDSVLVSLHNL 606
P KP S +YF+ WQ++ L L NL
Sbjct: 780 PVSTKPVPESSCRIYFSYGWQETPLYKLQNL 810
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,612,127
Number of Sequences: 37544
Number of extensions: 353772
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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