Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B18
(868 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 54 3e-08
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 36 0.010
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 33 0.053
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 33 0.070
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 31 0.21
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 30 0.37
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 30 0.49
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 29 0.86
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 29 1.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 2.0
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 2.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 28 2.0
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 2.6
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 27 2.6
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 3.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 6.0
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 26 6.0
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 6.0
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 6.0
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ... 26 8.0
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 53.6 bits (123), Expect = 3e-08
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 6/125 (4%)
Frame = +3
Query: 411 VNCPICNRSFENTEIEEHVNKCLFLNSCEKS------NSKRQGQQLLSPNEKRKKVEKLT 572
V CP+C ++ +I H++ +S +R L + + K
Sbjct: 7 VQCPVCAKTVTMNDINPHLDSHYSDSSGPSKPVSPFFKKERYKHHLETNVSSHQSATKFI 66
Query: 573 ALPPNLKSSQSQKISTNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPN 752
P S ++K PL+E RPKSLD+ VGQ++ G ++R+++EQ++ +
Sbjct: 67 EPEP----SPTKKTKLTRRDTRPLAERARPKSLDEYVGQEELVGERGIIRNLIEQDRCNS 122
Query: 753 MILWG 767
MILWG
Sbjct: 123 MILWG 127
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 35.5 bits (78), Expect = 0.010
Identities = 23/63 (36%), Positives = 33/63 (52%)
Frame = +3
Query: 579 PPNLKSSQSQKISTNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPNMI 758
P N K+ Q K S IP E RPK+LDQ+ Q+ T +L+ L N +P+M+
Sbjct: 6 PRNKKTEQEAKKS------IPWVELYRPKTLDQVSSQE---STVQVLKKTLLSNNLPHML 56
Query: 759 LWG 767
+G
Sbjct: 57 FYG 59
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 33.1 bits (72), Expect = 0.053
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Frame = +3
Query: 411 VNCPICNRSFENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNL 590
V+CP C+ + +I +H++ CL S S+S N+ K L + +
Sbjct: 157 VHCPACSNLVPHNQINQHLDSCLNSPSSPSSSSSPY------KNKDNSKSNSLLSFKTDD 210
Query: 591 KSSQSQKI-STNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKIPNMILWG 767
S +++ S N ++PL + +R L + ++S +RS L + +P G
Sbjct: 211 DSITKRRLRSFNSADELPLKDRVRLPKL------TYALLSESKIRSKLSEMGLPTD---G 261
Query: 768 H-QAAERRH 791
H Q +RRH
Sbjct: 262 HKQLLQRRH 270
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 32.7 bits (71), Expect = 0.070
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = +3
Query: 522 QQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNENIKIPLSESL----RPKSLDQIVGQ 689
+++L ++ K+++K A +S S++ S + IK PLS SL PK ++IVG
Sbjct: 210 EKMLFEEKRAKRIKKQGAST----ASSSREASLDSTIKQPLSASLLESSEPKEKEEIVGS 265
Query: 690 KQSFGTD 710
+ GTD
Sbjct: 266 LEEEGTD 272
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 31.1 bits (67), Expect = 0.21
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 405 KTVNCPICNRSFENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKL 569
+TV C +C+ +N E H CL ++ E ++ LL NE+R ++ L
Sbjct: 180 ETVLCRVCDHEIQNWYFEHHTELCLLIHHAEA--RAQEANDLL--NEQRNALQSL 230
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 30.3 bits (65), Expect = 0.37
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 764 GSPGCGKTSLANVISN 811
G PGCGKT LAN ++N
Sbjct: 215 GPPGCGKTMLANALAN 230
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 764 GSPGCGKTSLANVISNICK 820
G PGCGKT LA ++N K
Sbjct: 533 GPPGCGKTLLAKAVANESK 551
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 29.9 bits (64), Expect = 0.49
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Frame = +3
Query: 432 RSFENTEIEEHVNKCLFLNSCEKSNS--KRQGQQLLSPNEKRKK-VEKLTALPPNLKSSQ 602
R+ EN E H N + + + SN+ R L+P E+ K VE PP KSS+
Sbjct: 539 RAKENEE-GNHSNATCTIKNDDLSNTLNNRAANTKLNPKEEDKSTVESELKAPPKEKSSE 597
Query: 603 SQKISTNENIKIPLSESLRPKSLDQIVGQKQSFGTDSMLRSMLEQNKI 746
+ K NE + R S D+I K++F D+ + + +Q I
Sbjct: 598 TSKEYLNEPSVVKDFVVERTPS-DKISESKEAF--DAKVEEISDQRAI 642
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.86
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 408 TVNCPICNRSFENT--EIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKL 569
TV CP+C ++ EN + +HV+ CL + E S +P K++K L
Sbjct: 489 TVPCPVCQKNIENELGILNQHVDLCL---NVETVKSLINTDHTANPTIKKRKSNTL 541
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 758 FVGSPGCGKTSLANVISNIC 817
F G PG GKT LA I+N C
Sbjct: 536 FFGPPGTGKTLLAKAIANEC 555
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.9 bits (59), Expect = 2.0
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Frame = -1
Query: 685 PTIWSRDFGLKDSDRGIFMFSFVLIFCDC----ELFKFGGKAVNFSTFFLFSFGDNSCCP 518
P W+ DF LK++ IF+ V + DC L K K F+ NS P
Sbjct: 766 PEGWNFDFRLKNARVSIFLDDDVSLLLDCGGFTTLKKTEKKYAEMHAKFIQIHTKNSDVP 825
Query: 517 CL-----------FELDFSHELRKRHLFTCSSISV 446
L ++L +L K H TCS IS+
Sbjct: 826 TLWDRFLALGNVRYQLKDLSDLEKLHQVTCSYISI 860
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 251 TILPSLFIPSPFFVSSQIFNYENKIRK 331
T+ P F+P FF+SS +++Y I++
Sbjct: 576 TLGPRFFLPKKFFLSSPVYDYHPVIQQ 602
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 758 FVGSPGCGKTSLANVISNICKNKXXK 835
F G PG GKT +A V++ C K K
Sbjct: 411 FHGPPGTGKTLMARVLAANCSTKNQK 436
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/76 (25%), Positives = 38/76 (50%)
Frame = +3
Query: 510 KRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNENIKIPLSESLRPKSLDQIVGQ 689
KR +QLL+ + KKV + N S + +++ I LS+ ++P++ ++G
Sbjct: 229 KRLDEQLLNSVKSMKKVSQQLKPQKNTNDSNNDHTLLSQDQLIELSKLVKPRTKLLLLGP 288
Query: 690 KQSFGTDSMLRSMLEQ 737
+S G ++L + Q
Sbjct: 289 PKS-GKKTLLSRLFFQ 303
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 764 GSPGCGKTSLANVISN 811
G PGCGKT LA+ IS+
Sbjct: 647 GYPGCGKTYLASAISS 662
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 758 FVGSPGCGKTSLANVISNICKNKXXKFVXY 847
F G PG GKT +A ++ C ++ K Y
Sbjct: 305 FHGPPGTGKTLMARALAAACSSENKKVSFY 334
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 498 KSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNENIKIPLSES 653
K +K+ + +SP + +K+ ++ ++ P+ KS + QK S + SES
Sbjct: 38 KEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESES 89
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 412 TVFVQSLIFLYFQFYEPGEETFKPSLI 332
T F +SL+ Y Q Y PGEE+ S I
Sbjct: 84 TFFSRSLVGFYDQGYTPGEESCTNSTI 110
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 758 FVGSPGCGKTSLANVISNICKNK 826
FVG P GK+S+ N + N+ K
Sbjct: 150 FVGMPNTGKSSILNSLRNVALRK 172
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 6.0
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 451 SVFSKLLLHIGQFTVFVQSLIFLYFQFYEPG--EETFKPSLI 332
SV + +HI +++ +++LY E EETFKPSL+
Sbjct: 1063 SVLGQFAIHIVTL-IYITRVVYLYEDPLEKVDLEETFKPSLL 1103
>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 8.0
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 393 SDCTKTVNCPICNRSFENTEIEE--HVNKCLFLNSCEKSNSK 512
S ++ + CPIC + E+ ++ HVN CL + E + K
Sbjct: 101 STMSELLLCPICGITLESLTVDANIHVNDCLDGRTTEAVSKK 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,050
Number of Sequences: 5004
Number of extensions: 65185
Number of successful extensions: 273
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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