Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B18
(868 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 33 0.30
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 33 0.30
08_02_0657 - 19749835-19751942,19753123-19753561 32 0.68
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 31 1.6
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395... 30 2.8
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458... 30 2.8
06_01_0065 + 549972-550770,551577-552190,552392-552544,552769-55... 30 2.8
06_01_0241 - 1827161-1827624,1829688-1829828,1830566-1830593,183... 29 6.4
01_01_0171 + 1446221-1446902,1447040-1447221,1447339-1447409,144... 29 6.4
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 758 FVGSPGCGKTSLANVISNICK 820
F G PGCGKT LA I+N C+
Sbjct: 531 FYGPPGCGKTLLAKAIANECQ 551
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 758 FVGSPGCGKTSLANVISNICK 820
F G PGCGKT LA I+N C+
Sbjct: 522 FYGPPGCGKTLLAKAIANECQ 542
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 31.9 bits (69), Expect = 0.68
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 758 FVGSPGCGKTSLANVISNICK 820
F G PGCGKT +A I+ CK
Sbjct: 528 FYGPPGCGKTMMAKAIAKECK 548
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 442 SKLLLHIGQFTVFVQSLIFLYFQFYEPGEETFKPSLIFSY 323
S+ ++ +G FT+F+ + YFQ YEP PS + Y
Sbjct: 686 SRNMIIVG-FTLFISMSVPAYFQQYEPSTNLILPSYLLPY 724
>10_01_0359 +
3956527-3956616,3957623-3957818,3958102-3959418,
3959482-3960445,3960588-3960648,3961500-3961946
Length = 1024
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 390 MSDCTKTVNCPICNRSFENTEIEEHVNKCLFLNSCEKSNSKRQGQ-QLLSPNEKRKKVEK 566
++ C +T+ C S +EE +K L++CEKSNS + Q + ++ + K ++ K
Sbjct: 756 LAKCNETIECRKLEFSLMEKNMEELTSK---LSACEKSNSLTETQLKCMAESYKSLELHK 812
Query: 567 L 569
L
Sbjct: 813 L 813
>09_06_0067 -
20645012-20645095,20645365-20645466,20645583-20645828,
20646042-20646236,20646343-20646636,20646952-20647134,
20647534-20647593,20647796-20648002,20648081-20648282,
20648367-20648494,20648759-20648842,20648955-20649134,
20649281-20649372,20649620-20649789,20650226-20650337,
20650451-20650554,20651262-20651371
Length = 850
Score = 29.9 bits (64), Expect = 2.8
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 758 FVGSPGCGKTSLANVISNICKNKXXKFVXYQL 853
FVG PG GKTSLA S+I K KF+ L
Sbjct: 406 FVGPPGVGKTSLA---SSIAKALNRKFIRISL 434
>06_01_0065 +
549972-550770,551577-552190,552392-552544,552769-552885,
552972-553076,553269-553334,553430-553494,553577-553778,
554026-554169,554212-554340
Length = 797
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +2
Query: 764 GSPGCGKTSLANVISN 811
G PGCGKT+LA+ I+N
Sbjct: 232 GPPGCGKTTLAHAIAN 247
>06_01_0241 -
1827161-1827624,1829688-1829828,1830566-1830593,
1830639-1830728
Length = 240
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 384 KNMSDCTKTVNCPICNRSFENTEIEEHVN-KCLF--LNSCEKSNSKRQG 521
+++S TKTVNC I I H N C+F L + +S+ KR+G
Sbjct: 11 QSLSVYTKTVNCSIIRAPAMTRLIVNHFNDTCIFHSLGAATESHYKRRG 59
>01_01_0171 +
1446221-1446902,1447040-1447221,1447339-1447409,
1447480-1447486,1447530-1447619,1447694-1447981,
1448121-1448333,1448860-1449087
Length = 586
Score = 28.7 bits (61), Expect = 6.4
Identities = 23/83 (27%), Positives = 43/83 (51%)
Frame = +3
Query: 450 EIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQKISTNEN 629
E+E N+ S E+ +R+ QQL + NE+ +K++ L +++K+ ++
Sbjct: 199 ELESQYNETTA--SLERVMEQRE-QQLQAYNEEIRKMQDLALRHSQRIMDENKKLRSDLE 255
Query: 630 IKIPLSESLRPKSLDQIVGQKQS 698
K+ L +S R K LD++ Q S
Sbjct: 256 SKMQLLDS-RSKELDKLAVQSNS 277
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,003,644
Number of Sequences: 37544
Number of extensions: 357152
Number of successful extensions: 1077
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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