Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B17
(887 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 286 1e-77
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 286 1e-77
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 82 5e-16
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 82 5e-16
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 82 6e-16
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 82 6e-16
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 78 7e-15
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 76 4e-14
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 66 4e-11
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 64 1e-10
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 64 1e-10
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 63 2e-10
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 63 2e-10
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 63 3e-10
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 62 4e-10
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 61 1e-09
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 52 7e-07
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 52 7e-07
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 52 7e-07
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 51 1e-06
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 50 2e-06
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 48 9e-06
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 48 9e-06
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 48 9e-06
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 48 9e-06
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 48 9e-06
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 47 2e-05
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 47 2e-05
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 47 2e-05
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 45 8e-05
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 45 8e-05
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 44 1e-04
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 44 2e-04
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 44 2e-04
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 43 3e-04
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 42 4e-04
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 42 4e-04
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 42 4e-04
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 42 6e-04
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 42 6e-04
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 42 6e-04
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 39 0.004
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 39 0.004
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 38 0.010
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 38 0.010
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.068
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 34 0.16
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 34 0.16
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 34 0.16
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 34 0.16
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 34 0.16
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 34 0.16
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 34 0.16
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 34 0.16
U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna b... 33 0.21
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 33 0.21
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 32 0.48
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 32 0.48
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 32 0.48
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 30 1.9
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 30 1.9
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 29 3.4
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 29 5.9
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 286 bits (702), Expect = 1e-77
Identities = 132/187 (70%), Positives = 156/187 (83%)
Frame = +1
Query: 199 PKIE*LRHIRXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFI 378
PK + + +GFVEFMGEEDADYAIK++NMIKLYGKP++VNKASAH+KN+DVGAN+F+
Sbjct: 45 PKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFV 104
Query: 379 GNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNN 558
GNLDPEVDEKLLYDTFSAFGVILQ PK+MRD ++G SK FAFINFASFEASD A+EAMN
Sbjct: 105 GNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNG 164
Query: 559 QYLCNRPISVSYAFKKDVKGERHGSXAERLLAAQNPLSHADRPHQLFADAPPTLMGPVLM 738
Q+LCNR I+VSYAFK+D KGERHG+ AER+LAAQNPL DRPHQ+F+D P + +
Sbjct: 165 QFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPL 224
Query: 739 AXPXXXA 759
A P A
Sbjct: 225 AMPGVHA 231
Score = 76.6 bits (180), Expect = 2e-14
Identities = 35/53 (66%), Positives = 44/53 (83%)
Frame = +3
Query: 72 GLLLERNQDATIYVGGLDDRVTESLLWERLRCSRGQLVNVHMPKDRVTQTHQG 230
G ++ERNQDATIYVGGLD++V+ES+LWE L G +V+V+MPKDRVT HQG
Sbjct: 4 GPIVERNQDATIYVGGLDEKVSESILWE-LMVQAGPVVSVNMPKDRVTANHQG 55
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 286 bits (702), Expect = 1e-77
Identities = 132/187 (70%), Positives = 156/187 (83%)
Frame = +1
Query: 199 PKIE*LRHIRXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFI 378
PK + + +GFVEFMGEEDADYAIK++NMIKLYGKP++VNKASAH+KN+DVGAN+F+
Sbjct: 55 PKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFV 114
Query: 379 GNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNN 558
GNLDPEVDEKLLYDTFSAFGVILQ PK+MRD ++G SK FAFINFASFEASD A+EAMN
Sbjct: 115 GNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNG 174
Query: 559 QYLCNRPISVSYAFKKDVKGERHGSXAERLLAAQNPLSHADRPHQLFADAPPTLMGPVLM 738
Q+LCNR I+VSYAFK+D KGERHG+ AER+LAAQNPL DRPHQ+F+D P + +
Sbjct: 175 QFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPL 234
Query: 739 AXPXXXA 759
A P A
Sbjct: 235 AMPGVHA 241
Score = 77.0 bits (181), Expect = 2e-14
Identities = 36/60 (60%), Positives = 46/60 (76%)
Frame = +3
Query: 51 LLKKWQRGLLLERNQDATIYVGGLDDRVTESLLWERLRCSRGQLVNVHMPKDRVTQTHQG 230
L + G ++ERNQDATIYVGGLD++V+ES+LWE L G +V+V+MPKDRVT HQG
Sbjct: 7 LRSEMSAGPIVERNQDATIYVGGLDEKVSESILWE-LMVQAGPVVSVNMPKDRVTANHQG 65
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 82.2 bits (194), Expect = 5e-16
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGA-NVFIGNLDPEVDEK 408
Y +V F DA+ A+ MN L+GKP+R+ + GA N+FI NLD +D K
Sbjct: 75 YAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNK 134
Query: 409 LLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 588
+YDTFS FG IL KV D E G SK + F++F + EA+ AI+ +N L + + V
Sbjct: 135 SIYDTFSLFGNILSC-KVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 59.7 bits (138), Expect = 3e-09
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 19/147 (12%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLD---------------- 357
+ +GFV F E+A+ A++ ++ + G ++++ A +K+
Sbjct: 252 KGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Query: 358 ---VGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 528
G N+++ NLD VD+ L F ++G I KVM D E G SK F F+ F E
Sbjct: 312 QKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSA-KVMTD-ENGRSKGFGFVCFEKPEE 369
Query: 529 SDAAIEAMNNQYLCNRPISVSYAFKKD 609
+ +A+ MN++ +C++P+ V+ +K+
Sbjct: 370 ATSAVTEMNSKMVCSKPLYVAIGQRKE 396
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/90 (31%), Positives = 56/90 (62%)
Frame = +1
Query: 364 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 543
A++++G+L P+V+E +L++ FSA G +L +V RD T S +A++NF ++ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSI-RVCRDNATRLSLGYAYVNFQQPADAERAM 90
Query: 544 EAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ MN + L +P+ + ++ ++D R G+
Sbjct: 91 DTMNFEALHGKPMRIMWS-QRDPAMRRSGA 119
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 82.2 bits (194), Expect = 5e-16
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGA-NVFIGNLDPEVDEK 408
Y +V F DA+ A+ MN L+GKP+R+ + GA N+FI NLD +D K
Sbjct: 75 YAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNK 134
Query: 409 LLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 588
+YDTFS FG IL KV D E G SK + F++F + EA+ AI+ +N L + + V
Sbjct: 135 SIYDTFSLFGNILSC-KVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 192
Score = 62.5 bits (145), Expect = 4e-10
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLD---------------- 357
+ +GFV F E+A+ A++ ++ + G ++++ A +K+
Sbjct: 252 KGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Query: 358 ---VGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 528
G N+++ NLD VD+ L F ++G I KVM D E G SK F F+ F E
Sbjct: 312 QKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSA-KVMTD-ENGRSKGFGFVCFEKPEE 369
Query: 529 SDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSXAERLLAAQNPLSHADRPHQLFADA 708
+ +A+ MN++ +C++P+ V+ A +K+ + + S + LA+ H + P +
Sbjct: 370 ATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMR--MHGNVPGAAMYN- 426
Query: 709 PPTLMGP 729
PT GP
Sbjct: 427 -PTQPGP 432
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/90 (31%), Positives = 56/90 (62%)
Frame = +1
Query: 364 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 543
A++++G+L P+V+E +L++ FSA G +L +V RD T S +A++NF ++ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSI-RVCRDNATRLSLGYAYVNFQQPADAERAM 90
Query: 544 EAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ MN + L +P+ + ++ ++D R G+
Sbjct: 91 DTMNFEALHGKPMRIMWS-QRDPAMRRSGA 119
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 81.8 bits (193), Expect = 6e-16
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVG-ANVFIGNLDPEVDEK 408
Y +V F DA+ A+ MN ++G+P+R+ + G N+FI NLD +D K
Sbjct: 100 YAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNK 159
Query: 409 LLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 588
+YDTFS FG IL KV D E GNSK + F++F + ++ AIE +N L ++ + V
Sbjct: 160 SVYDTFSLFGNILSC-KVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 58.8 bits (136), Expect = 5e-09
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAH-QKNLDVG------ANVFIGN 384
+ YGFV F E A AI+ +N + L K V V K Q+ ++G NVF+ N
Sbjct: 185 KGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKN 244
Query: 385 LDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQY 564
+D++ L FS FG I VM D + G K F F+ FA +A+ A+E +N+
Sbjct: 245 FGEHLDQEKLSAMFSKFGEITSAV-VMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSI 302
Query: 565 L--CNRPISVSYAFKK 606
L + +SV A KK
Sbjct: 303 LEGTDCKLSVCRAQKK 318
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/83 (36%), Positives = 51/83 (61%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
G N+++ N++ ++++ L D FS+FG I KVM D E G SK F F+ F E + AA
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSA-KVMVD-ENGRSKGFGFVCFEKPEEATAA 399
Query: 541 IEAMNNQYLCNRPISVSYAFKKD 609
+ MN++ + +P+ V+ A +K+
Sbjct: 400 VTDMNSKMIGAKPLYVALAQRKE 422
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/90 (30%), Positives = 54/90 (60%)
Frame = +1
Query: 364 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 543
A+++IG+L P+V E +L++ FS G +L +V RD + S +A++NF ++ A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSI-RVCRDNTSRLSLGYAYVNFQQPADAERAL 115
Query: 544 EAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ MN + + RP+ + ++ ++D R G+
Sbjct: 116 DTMNFEVIHGRPMRIMWS-QRDPAARRAGN 144
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 81.8 bits (193), Expect = 6e-16
Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVG-ANVFIGNLDPEVDEK 408
Y +V F DA+ A+ MN ++G+P+R+ + G N+FI NLD +D K
Sbjct: 100 YAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNK 159
Query: 409 LLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 588
+YDTFS FG IL KV D E GNSK + F++F + ++ AIE +N L ++ + V
Sbjct: 160 SVYDTFSLFGNILSC-KVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 58.8 bits (136), Expect = 5e-09
Identities = 47/136 (34%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAH-QKNLDVG------ANVFIGN 384
+ YGFV F E A AI+ +N + L K V V K Q+ ++G NVF+ N
Sbjct: 185 KGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKN 244
Query: 385 LDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQY 564
+D++ L FS FG I VM D + G K F F+ FA +A+ A+E +N+
Sbjct: 245 FGEHLDQEKLSAMFSKFGEITSAV-VMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSI 302
Query: 565 L--CNRPISVSYAFKK 606
L + +SV A KK
Sbjct: 303 LEGTDCKLSVCRAQKK 318
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/83 (36%), Positives = 51/83 (61%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
G N+++ N++ ++++ L D FS+FG I KVM D E G SK F F+ F E + AA
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSA-KVMVD-ENGRSKGFGFVCFEKPEEATAA 399
Query: 541 IEAMNNQYLCNRPISVSYAFKKD 609
+ MN++ + +P+ V+ A +K+
Sbjct: 400 VTDMNSKMIGAKPLYVALAQRKE 422
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/90 (30%), Positives = 54/90 (60%)
Frame = +1
Query: 364 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 543
A+++IG+L P+V E +L++ FS G +L +V RD + S +A++NF ++ A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSI-RVCRDNTSRLSLGYAYVNFQQPADAERAL 115
Query: 544 EAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ MN + + RP+ + ++ ++D R G+
Sbjct: 116 DTMNFEVIHGRPMRIMWS-QRDPAARRAGN 144
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 78.2 bits (184), Expect = 7e-15
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKA---SAHQKNLDVGAN--VFIGNLDPE 396
Y FVEF A A++ MN L + ++VN A Q +D + VF+G+L E
Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSE 145
Query: 397 VDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNR 576
VD + L + F FG + KV+RD T SK + F+++ E ++ AIE MN Q+L R
Sbjct: 146 VDNQKLREAFQPFGDVSDA-KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRR 204
Query: 577 PISVSYAFKKDVKGERHGSXAER 645
I ++A +K E+ E+
Sbjct: 205 TIRTNWATRKPGDQEKPSHYNEK 227
Score = 45.2 bits (102), Expect = 6e-05
Identities = 24/81 (29%), Positives = 45/81 (55%)
Frame = +1
Query: 355 DVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASD 534
D +++GNLD V E + F+ G + +T KV+ D G++ +AF+ F+ +
Sbjct: 43 DEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKT-KVIFD---GSNDPYAFVEFSDHGQAS 98
Query: 535 AAIEAMNNQYLCNRPISVSYA 597
A++ MN + L +R + V++A
Sbjct: 99 QALQTMNKRLLLDREMKVNWA 119
Score = 33.5 bits (73), Expect = 0.21
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASA-----------HQKNLDV---- 360
+ YGFV + E+A+ AI+ MN L + +R N A+ ++K+ D
Sbjct: 176 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQ 235
Query: 361 ----GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 528
+V++GN+ + E + F++FG I + ++ + + +AF+ F + +A
Sbjct: 236 TSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEV-RIFK------MQGYAFVKFDNKDA 287
Query: 529 SDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ AI MNNQ + + + S+ D GS
Sbjct: 288 AAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGS 322
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 75.8 bits (178), Expect = 4e-14
Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 1/110 (0%)
Frame = +1
Query: 262 DADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGA-NVFIGNLDPEVDEKLLYDTFSAFG 438
DA+ A+ MN L+GKP+R+ + GA N+FI NLD +D K +YDTFS FG
Sbjct: 22 DAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG 81
Query: 439 VILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISV 588
IL KV D E G SK + F++F + EA+ AI+ +N L + + V
Sbjct: 82 NILSC-KVAID-EDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFV 129
Score = 62.5 bits (145), Expect = 4e-10
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLD---------------- 357
+ +GFV F E+A+ A++ ++ + G ++++ A +K+
Sbjct: 189 KGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 248
Query: 358 ---VGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 528
G N+++ NLD VD+ L F ++G I KVM D E G SK F F+ F E
Sbjct: 249 QKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSA-KVMTD-ENGRSKGFGFVCFEKPEE 306
Query: 529 SDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSXAERLLAAQNPLSHADRPHQLFADA 708
+ +A+ MN++ +C++P+ V+ A +K+ + + S + LA+ H + P +
Sbjct: 307 ATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMR--MHGNVPGAAMYN- 363
Query: 709 PPTLMGP 729
PT GP
Sbjct: 364 -PTQPGP 369
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 65.7 bits (153), Expect = 4e-11
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKA--------SAHQKNLDVGANVFIGNL 387
Y FVEF A A++ N +L K + V A + + +VF+G+L
Sbjct: 80 YAFVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDL 139
Query: 388 DPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYL 567
E+D L + F FG + + K++RD T K + F+++ E ++ AI+ MN +L
Sbjct: 140 CSEIDSTKLREAFVKFGEVSEA-KIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWL 198
Query: 568 CNRPISVSYAFKK-DVKGERHGSXAER 645
R I ++A +K D GER G +R
Sbjct: 199 GRRTIRTNWATRKPDEDGERGGDRGDR 225
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/84 (23%), Positives = 44/84 (52%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+F+ NLDP + ++ L F+ G +++ + G + +AF+ F+ + A+++
Sbjct: 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFE----GLNDPYAFVEFSDHNQATLALQS 97
Query: 550 MNNQYLCNRPISVSYAFKKDVKGE 621
N + L + + V++AF+ GE
Sbjct: 98 HNGRELLEKEMHVTWAFEPREPGE 121
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 336
+ YGFV + EDA+ AI MN L + +R N A+
Sbjct: 173 KGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWAT 209
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 64.5 bits (150), Expect = 1e-10
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKL 411
YGFV ++ EEDA A+ N ++L K ++V+ A + G+N+++ + +
Sbjct: 85 YGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIK-GSNLYVSGIPKSMTLHE 143
Query: 412 LYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYL--CNRPIS 585
L F FG I+ T +++ D TG SK F+ F + +D AI+ +N C+ I+
Sbjct: 144 LESIFRPFGQII-TSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQIT 202
Query: 586 VSYA 597
V +A
Sbjct: 203 VKFA 206
Score = 46.0 bits (104), Expect = 4e-05
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +1
Query: 349 NLDVG---ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFAS 519
N+D+G N+ I L + ++ + F++ G I ++ K++RD TG S + F+N+
Sbjct: 34 NVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEI-ESCKLVRDKVTGQSLGYGFVNYVR 92
Query: 520 FEASDAAIEAMNNQYLCNRPISVSYA 597
E + A+ + N L N+ I VSYA
Sbjct: 93 EEDALRAVSSFNGLRLQNKTIKVSYA 118
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 64.5 bits (150), Expect = 1e-10
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 5/125 (4%)
Frame = +1
Query: 286 MNMIKLYGKPVRVNKA---SAHQKNLDVGAN--VFIGNLDPEVDEKLLYDTFSAFGVILQ 450
MN L + ++VN A Q +D + VF+G+L EVD + L + F FG +
Sbjct: 1 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 60
Query: 451 TPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHG 630
KV+RD T SK + F+++ E ++ AIE MN Q+L R I ++A +K E+
Sbjct: 61 A-KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPS 119
Query: 631 SXAER 645
E+
Sbjct: 120 HYNEK 124
Score = 33.5 bits (73), Expect = 0.21
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASA-----------HQKNLDV---- 360
+ YGFV + E+A+ AI+ MN L + +R N A+ ++K+ D
Sbjct: 73 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQ 132
Query: 361 ----GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 528
+V++GN+ + E + F++FG I + ++ + + +AF+ F + +A
Sbjct: 133 TSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEV-RIFK------MQGYAFVKFDNKDA 184
Query: 529 SDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ AI MNNQ + + + S+ D GS
Sbjct: 185 AAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGS 219
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/93 (35%), Positives = 52/93 (55%)
Frame = +1
Query: 367 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 546
+VF+G+L EVD + L + F FG + KV+RD T SK + F+++ E ++ AIE
Sbjct: 23 HVFVGDLSSEVDNQKLREAFQPFGDVSDA-KVIRDTNTTKSKGYGFVSYPKREEAERAIE 81
Query: 547 AMNNQYLCNRPISVSYAFKKDVKGERHGSXAER 645
MN Q+L R I ++A +K E+ E+
Sbjct: 82 QMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEK 114
Score = 33.5 bits (73), Expect = 0.21
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASA-----------HQKNLDV---- 360
+ YGFV + E+A+ AI+ MN L + +R N A+ ++K+ D
Sbjct: 63 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQ 122
Query: 361 ----GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 528
+V++GN+ + E + F++FG I + ++ + + +AF+ F + +A
Sbjct: 123 TSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEV-RIFK------MQGYAFVKFDNKDA 174
Query: 529 SDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ AI MNNQ + + + S+ D GS
Sbjct: 175 AAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGS 209
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 63.3 bits (147), Expect = 2e-10
Identities = 33/93 (35%), Positives = 52/93 (55%)
Frame = +1
Query: 367 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 546
+VF+G+L EVD + L + F FG + KV+RD T SK + F+++ E ++ AIE
Sbjct: 104 HVFVGDLSSEVDNQKLREAFQPFGDVSDA-KVIRDTNTTKSKGYGFVSYPKREEAERAIE 162
Query: 547 AMNNQYLCNRPISVSYAFKKDVKGERHGSXAER 645
MN Q+L R I ++A +K E+ E+
Sbjct: 163 QMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEK 195
Score = 33.5 bits (73), Expect = 0.21
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASA-----------HQKNLDV---- 360
+ YGFV + E+A+ AI+ MN L + +R N A+ ++K+ D
Sbjct: 144 KGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQ 203
Query: 361 ----GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 528
+V++GN+ + E + F++FG I + ++ + + +AF+ F + +A
Sbjct: 204 TSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEV-RIFK------MQGYAFVKFDNKDA 255
Query: 529 SDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ AI MNNQ + + + S+ D GS
Sbjct: 256 AAKAIVQMNNQDVGGQLVRCSWGKTGDTGKTPGGS 290
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 62.9 bits (146), Expect = 3e-10
Identities = 38/123 (30%), Positives = 63/123 (51%)
Frame = +1
Query: 238 FVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 417
+V+F EE + A+K N KL +RV+K + +K +F+GNL E+ E L
Sbjct: 205 YVKFGAEESVEKALKY-NGTKLDDHVIRVDKVGSKKKEFGKDMAIFVGNLPFEITEDALI 263
Query: 418 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 597
FSA ++ +++RD +TG K FAF+NF + A+ +M + R + ++
Sbjct: 264 TFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL-SMETIKMEKRDLRITKV 322
Query: 598 FKK 606
KK
Sbjct: 323 MKK 325
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 62.5 bits (145), Expect = 4e-10
Identities = 50/187 (26%), Positives = 90/187 (48%), Gaps = 19/187 (10%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLD---------------- 357
+ +GFV F E+A+ A++ ++ + G ++++ A +K+
Sbjct: 192 KGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 251
Query: 358 ---VGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEA 528
G N+++ NLD VD+ L F ++G I KVM D E G SK F F+ F E
Sbjct: 252 QKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSA-KVMTD-ENGRSKGFGFVCFEKPEE 309
Query: 529 SDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSXAERLLAAQNPLSHADRPHQLFADA 708
+ +A+ MN++ +C++P+ V+ A +K+ + + S + LA+ H + P +
Sbjct: 310 ATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMR--MHGNVPGAAMYN- 366
Query: 709 PPTLMGP 729
PT GP
Sbjct: 367 -PTQPGP 372
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/90 (31%), Positives = 56/90 (62%)
Frame = +1
Query: 364 ANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 543
A++++G+L P+V+E +L++ FSA G +L +V RD T S +A++NF ++ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSI-RVCRDNATRLSLGYAYVNFQQPADAERAM 90
Query: 544 EAMNNQYLCNRPISVSYAFKKDVKGERHGS 633
+ MN + L +P+ + ++ ++D R G+
Sbjct: 91 DTMNFEALHGKPMRIMWS-QRDPAMRRSGA 119
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGA-NVFIGNLD 390
Y +V F DA+ A+ MN L+GKP+R+ + GA N+FI NLD
Sbjct: 75 YAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLD 128
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 60.9 bits (141), Expect = 1e-09
Identities = 28/86 (32%), Positives = 54/86 (62%)
Frame = +1
Query: 367 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 546
+VF+G+L +V +LL TF+ FG + + KV+RD +T SK + F++F + + ++ AI
Sbjct: 136 HVFVGDLSKDVSNELLKSTFTKFGEVSEA-KVIRDVQTQKSKGYGFVSFPNKQNAENAIA 194
Query: 547 AMNNQYLCNRPISVSYAFKKDVKGER 624
MN +++ R + ++A +K+ + R
Sbjct: 195 GMNGKWIGKRAVRTNWAARKNSEENR 220
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/108 (27%), Positives = 57/108 (52%)
Frame = +1
Query: 268 DYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVIL 447
D +IK + + + + + + + L + + +++G++ E+ E +L F FG I
Sbjct: 70 DISIKQILLRQQKQQQENQQRQQMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPI- 128
Query: 448 QTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVS 591
++ + DP TG+ K FAF+ + EA+ A E+MN Q L R + V+
Sbjct: 129 KSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/108 (27%), Positives = 57/108 (52%)
Frame = +1
Query: 268 DYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVIL 447
D +IK + + + + + + + L + + +++G++ E+ E +L F FG I
Sbjct: 70 DISIKQILLRQQKQQQENQQRQQMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPI- 128
Query: 448 QTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVS 591
++ + DP TG+ K FAF+ + EA+ A E+MN Q L R + V+
Sbjct: 129 KSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/108 (27%), Positives = 57/108 (52%)
Frame = +1
Query: 268 DYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVIL 447
D +IK + + + + + + + L + + +++G++ E+ E +L F FG I
Sbjct: 70 DISIKQILLRQQKQQQENQQRQQMYSQALSIMSRIYVGSISFEIREDMLRRAFDPFGPI- 128
Query: 448 QTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVS 591
++ + DP TG+ K FAF+ + EA+ A E+MN Q L R + V+
Sbjct: 129 KSINMSWDPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/79 (35%), Positives = 44/79 (55%)
Frame = +1
Query: 367 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 546
+V++GN + E+ L + FS+ G I +++ D ETG + FAFI FA ++ A+E
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQI-NNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 547 AMNNQYLCNRPISVSYAFK 603
MN RP+ V+ A K
Sbjct: 65 QMNGAEFNGRPLRVNLANK 83
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 336
R + F+EF E A A++ MN + G+P+RVN A+
Sbjct: 46 RGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLAN 82
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/77 (33%), Positives = 40/77 (51%)
Frame = +1
Query: 367 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 546
+VF+GN+ +V E + FS G +L K++ D ETG K + FI F + ++ AI
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSI-KMVHDRETGKPKGYGFIEFPDIQTAEVAIR 77
Query: 547 AMNNQYLCNRPISVSYA 597
+N L R + V A
Sbjct: 78 NLNGYELSGRILRVDSA 94
Score = 32.7 bits (71), Expect = 0.36
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGAN 369
+ YGF+EF + A+ AI+ +N +L G+ +RV+ A+ + G++
Sbjct: 59 KGYGFIEFPDIQTAEVAIRNLNGYELSGRILRVDSAAGGMNMEEFGSS 106
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
GAN+FI +L + + L +TF+ FG IL KV D T SK F F+++ + +++ A
Sbjct: 334 GANLFIYHLPQDFGDSDLINTFAPFGGILSA-KVFIDKVTNLSKCFGFVSYENAQSATNA 392
Query: 541 IEAMNNQYLCNRPISV 588
I AMN + ++ + V
Sbjct: 393 ISAMNGFQIGSKRLKV 408
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
GAN+FI +L + + L +TF+ FG IL KV D T SK F F+++ + +++ A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSA-KVFIDKVTNLSKCFGFVSYENAQSATNA 556
Query: 541 IEAMNNQYLCNRPISV 588
I AMN + ++ + V
Sbjct: 557 ISAMNGFQIGSKRLKV 572
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
GAN+FI +L + + L +TF+ FG IL KV D T SK F F+++ + +++ A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSA-KVFIDKVTNLSKCFGFVSYENAQSATNA 556
Query: 541 IEAMNNQYLCNRPISV 588
I AMN + ++ + V
Sbjct: 557 ISAMNGFQIGSKRLKV 572
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
GAN+FI +L + + L +TF+ FG IL KV D T SK F F+++ + +++ A
Sbjct: 427 GANLFIYHLPQDFGDSDLINTFAPFGGILSA-KVFIDKVTNLSKCFGFVSYENAQSATNA 485
Query: 541 IEAMNNQYLCNRPISV 588
I AMN + ++ + V
Sbjct: 486 ISAMNGFQIGSKRLKV 501
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 48.0 bits (109), Expect = 9e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
GAN+FI +L + + L +TF+ FG IL KV D T SK F F+++ + +++ A
Sbjct: 498 GANLFIYHLPQDFGDSDLINTFAPFGGILSA-KVFIDKVTNLSKCFGFVSYENAQSATNA 556
Query: 541 IEAMNNQYLCNRPISV 588
I AMN + ++ + V
Sbjct: 557 ISAMNGFQIGSKRLKV 572
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 47.2 bits (107), Expect = 2e-05
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
G N+FI +L E + L F+ FG I+ KV D T SK F F+++ + +S AA
Sbjct: 428 GCNLFIYHLPQEFGDAELIQMFAPFGHIVSA-KVFVDRATNQSKCFGFVSYDNIHSSQAA 486
Query: 541 IEAMN 555
I AMN
Sbjct: 487 ITAMN 491
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+F+G + ++EK L F FG I + +++D TG K AF+ + +++
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEF-TILKDKYTGMHKGCAFLTYCHRDSAVRCQAT 89
Query: 550 MNNQ 561
+++Q
Sbjct: 90 LHDQ 93
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/121 (23%), Positives = 47/121 (38%)
Frame = +1
Query: 310 KPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 489
KP + A K+ +FIG L + E + F+ FG L V+R + G S
Sbjct: 106 KPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGE-LDEVTVLRGAD-GAS 163
Query: 490 KAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSXAERLLAAQNPL 669
K AF+ + + AI A++ S D + ER +++ A L
Sbjct: 164 KGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGML 223
Query: 670 S 672
+
Sbjct: 224 N 224
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/81 (29%), Positives = 45/81 (55%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
G +V++GN+ + E+ + + F+A G + +++ D ETG + FAF+ F+ + A
Sbjct: 5 GFSVYVGNVPYQGTEEEIGNYFAAVGHV-NNVRIVYDRETGRPRGFAFVEFSEEAGAQRA 63
Query: 541 IEAMNNQYLCNRPISVSYAFK 603
+E +N R + V+YA K
Sbjct: 64 VEQLNGVAFNGRNLRVNYANK 84
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKAS 336
R + FVEF E A A++ +N + G+ +RVN A+
Sbjct: 47 RGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYAN 83
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 47.2 bits (107), Expect = 2e-05
Identities = 26/65 (40%), Positives = 36/65 (55%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
G N+FI +L E + L F+ FG I+ KV D T SK F F+++ + +S AA
Sbjct: 428 GCNLFIYHLPQEFGDAELIQMFAPFGHIVSA-KVFVDRATNQSKCFGFVSYDNIHSSQAA 486
Query: 541 IEAMN 555
I AMN
Sbjct: 487 ITAMN 491
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+F+G + ++EK L F FG I + +++D TG K AF+ + +++
Sbjct: 31 LFVGQIPRNLEEKDLRHLFEQFGKIYEF-TILKDKYTGMHKGCAFLTYCHRDSAVRCQAT 89
Query: 550 MNNQ 561
+++Q
Sbjct: 90 LHDQ 93
Score = 29.9 bits (64), Expect = 2.5
Identities = 29/121 (23%), Positives = 47/121 (38%)
Frame = +1
Query: 310 KPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNS 489
KP + A K+ +FIG L + E + F+ FG L V+R + G S
Sbjct: 106 KPADTDSRPASPKDKMDDKKLFIGMLSKQQSEDEVRALFATFGE-LDEVTVLRGAD-GAS 163
Query: 490 KAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVKGERHGSXAERLLAAQNPL 669
K AF+ + + AI A++ S D + ER +++ A L
Sbjct: 164 KGCAFVKYKHGLDAHMAISALHGSQTMPGASSSLVVKYADTEKERQNRRMQQMAAQMGML 223
Query: 670 S 672
+
Sbjct: 224 N 224
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/106 (26%), Positives = 49/106 (46%)
Frame = +1
Query: 298 KLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPE 477
K+ G K + H + +F+G + PEV+ + L F+ +G + Q +V D
Sbjct: 7 KINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQA-QVKYDRT 65
Query: 478 TGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVK 615
G S+ FAF+ F + E A+ A Q + + + V A ++ K
Sbjct: 66 NGRSRGFAFVEFTTGEGCKLAL-AAREQTIKGKSVEVKPAKSRENK 110
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 47.2 bits (107), Expect = 2e-05
Identities = 28/106 (26%), Positives = 49/106 (46%)
Frame = +1
Query: 298 KLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPE 477
K+ G K + H + +F+G + PEV+ + L F+ +G + Q +V D
Sbjct: 7 KINGNASETIKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQA-QVKYDRT 65
Query: 478 TGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVK 615
G S+ FAF+ F + E A+ A Q + + + V A ++ K
Sbjct: 66 NGRSRGFAFVEFTTGEGCKLAL-AAREQTIKGKSVEVKPAKSRENK 110
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/110 (27%), Positives = 54/110 (49%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDE 405
+ YGFV+F + A A+ +N + V+ A Q+ D N++I NL + E
Sbjct: 148 KGYGFVDFESPQAAAAAVDGLNT-----EGVQAQMAKLQQQEQD-PTNLYIANLPLDFTE 201
Query: 406 KLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMN 555
++L + FG+++ T +++R P+ S+ F S E + I A+N
Sbjct: 202 QMLETELNKFGMVIST-RILRTPD-NQSRGVGFARMDSKEKCEVIISALN 249
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 44.8 bits (101), Expect = 8e-05
Identities = 30/110 (27%), Positives = 54/110 (49%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDE 405
+ YGFV+F + A A+ +N + V+ A Q+ D N++I NL + E
Sbjct: 122 KGYGFVDFESPQAAAAAVDGLNT-----EGVQAQMAKLQQQEQD-PTNLYIANLPLDFTE 175
Query: 406 KLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMN 555
++L + FG+++ T +++R P+ S+ F S E + I A+N
Sbjct: 176 QMLETELNKFGMVIST-RILRTPD-NQSRGVGFARMDSKEKCEVIISALN 223
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+++G +V EK+L F FG ++ + D E+G + F F+ F E + AI+
Sbjct: 13 LYVGGFTEDVTEKVLMAAFIPFGDVVAI-SIPMDYESGKHRGFGFVEFDMAEDAAMAIDN 71
Query: 550 MNNQYLCNRPISVSYA 597
MN L + I V++A
Sbjct: 72 MNESELFGKTIRVNFA 87
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKA 333
R +GFVEF EDA AI MN +L+GK +RVN A
Sbjct: 52 RGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 90 NQDATIYVGGLDDRVTESLLWERLRCSRGQLVNVHMPKDRVTQTHQG 230
N+ T+YVGG + VTE +L G +V + +P D + H+G
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAF-IPFGDVVAISIPMDYESGKHRG 53
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/89 (31%), Positives = 45/89 (50%)
Frame = +1
Query: 328 KASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFI 507
K S HQ D A ++IG L + E + FS +G ++ ++RD +TG SK FAF+
Sbjct: 27 KKSWHQTYKD-SAWIYIGGLSYALSEGDVIAVFSQYGEVMNI-NLIRDKDTGKSKGFAFL 84
Query: 508 NFASFEASDAAIEAMNNQYLCNRPISVSY 594
+ ++ A++ N L R I V +
Sbjct: 85 CYKDQRSTILAVDNFNGISLHKRMIRVDH 113
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 43.6 bits (98), Expect = 2e-04
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Frame = +1
Query: 238 FVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQK---NLDVGA-------------N 369
+VEF EE + +N +L G P+++ + A + N V + +
Sbjct: 70 YVEFWDEESVPLGL-ALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTH 128
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
V + NL P++DEK++ D F +FG I + + ++ FA I F + + + + E
Sbjct: 129 VLVENLHPKIDEKMIRDIFESFGRIEKID--LEVDSNRENRGFATITFRNADDAQKSCEQ 186
Query: 550 MNNQYLCNRPISVS 591
+NN L R I +S
Sbjct: 187 LNNFELAGRCIRLS 200
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 43.6 bits (98), Expect = 2e-04
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Frame = +1
Query: 238 FVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQK---NLDVGA-------------N 369
+VEF EE + +N +L G P+++ + A + N V + +
Sbjct: 215 YVEFWDEESVPLGL-ALNGQRLMGAPLQIQRTCAERNRAANSSVASTLGFVAPGNKGPTH 273
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
V + NL P++DEK++ D F +FG I + + ++ FA I F + + + + E
Sbjct: 274 VLVENLHPKIDEKMIRDIFESFGRIEKID--LEVDSNRENRGFATITFRNADDAQKSCEQ 331
Query: 550 MNNQYLCNRPISVS 591
+NN L R I +S
Sbjct: 332 LNNFELAGRCIRLS 345
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 43.2 bits (97), Expect = 3e-04
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Frame = +1
Query: 247 FMGEEDADYAI--KVMN-MIKLYGKPVRVNKASAHQKNLDVGANVFIGNLDPEVDEKLLY 417
F E +A+ AI ++ N M K V QK +D +VFIGN+D + +
Sbjct: 14 FEMEIEAESAILQQIQNKMAKHLESAAYVPPTEEEQKAIDA-KSVFIGNVDFNSTIEEIE 72
Query: 418 DTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYA 597
+ F G I++T + +D T K FA+I F + + A+ MN +RPI V+ A
Sbjct: 73 EHFKGCGQIVKT-TIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPIVVT-A 129
Query: 598 FKKDVKGERHG 630
+ ++ G HG
Sbjct: 130 KRTNIPGMGHG 140
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +1
Query: 331 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 510
AS +NL +F+G L + L+ + +S FG I VMRDP T S+ F F+
Sbjct: 15 ASLEPENL---RKIFVGGLTSNTTDDLMREFYSQFGEITDII-VMRDPTTKRSRGFGFVT 70
Query: 511 FASFEASDAAIE 546
F+ DAA++
Sbjct: 71 FSGKTEVDAAMK 82
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +1
Query: 331 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 510
AS +NL +F+G L + L+ + +S FG I VMRDP T S+ F F+
Sbjct: 15 ASLEPENL---RKIFVGGLTSNTTDDLMREFYSQFGEITDII-VMRDPTTKRSRGFGFVT 70
Query: 511 FASFEASDAAIE 546
F+ DAA++
Sbjct: 71 FSGKTEVDAAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 42.3 bits (95), Expect = 4e-04
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +1
Query: 331 ASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFIN 510
AS +NL +F+G L + L+ + +S FG I VMRDP T S+ F F+
Sbjct: 15 ASLEPENL---RKIFVGGLTSNTTDDLMREFYSQFGEITDII-VMRDPTTKRSRGFGFVT 70
Query: 511 FASFEASDAAIE 546
F+ DAA++
Sbjct: 71 FSGKTEVDAAMK 82
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/58 (34%), Positives = 37/58 (63%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 543
+FIG L + ++ L + FS +G ++ V+RDP T +S+ F F+ FAS ++++A+
Sbjct: 51 LFIGGLSHDTTDEQLGNYFSQWGPVVDAI-VIRDPNTKHSRGFGFVTFASIFSAESAM 107
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/58 (34%), Positives = 37/58 (63%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 543
+FIG L + ++ L + FS +G ++ V+RDP T +S+ F F+ FAS ++++A+
Sbjct: 71 LFIGGLSHDTTDEQLGNYFSQWGPVVDAI-VIRDPNTKHSRGFGFVTFASIFSAESAM 127
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/58 (34%), Positives = 37/58 (63%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAI 543
+FIG L + ++ L + FS +G ++ V+RDP T +S+ F F+ FAS ++++A+
Sbjct: 72 LFIGGLSHDTTDEQLGNYFSQWGPVVDAI-VIRDPNTKHSRGFGFVTFASIFSAESAM 128
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/76 (30%), Positives = 43/76 (56%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+F+ L+P ++ L FS FG I +++RD +G+S +AFI F + ++ + A
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKI-NNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFK 301
Query: 550 MNNQYLCNRPISVSYA 597
M+N + +R I V ++
Sbjct: 302 MDNVLIDDRRIHVDFS 317
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/79 (29%), Positives = 39/79 (49%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
G +V++GN + E L + FS G + +++ D ETG + FAF+ F A+ A
Sbjct: 3 GFSVYVGNAPFQTTEDDLGNYFSQAGNVSNV-RIVCDRETGRPRGFAFVEFTEEAAAQRA 61
Query: 541 IEAMNNQYLCNRPISVSYA 597
++ N R + V+ A
Sbjct: 62 VDQFNGVDFNGRALRVNLA 80
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKA 333
R + FVEF E A A+ N + G+ +RVN A
Sbjct: 45 RGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/76 (30%), Positives = 43/76 (56%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+F+ L+P ++ L FS FG I +++RD +G+S +AFI F + ++ + A
Sbjct: 243 LFVCKLNPVTTDEDLEIIFSRFGKI-NNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFK 301
Query: 550 MNNQYLCNRPISVSYA 597
M+N + +R I V ++
Sbjct: 302 MDNVLIDDRRIHVDFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/76 (30%), Positives = 43/76 (56%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+F+ L+P ++ L FS FG I +++RD +G+S +AFI F + ++ + A
Sbjct: 174 LFVCKLNPVTTDEDLEIIFSRFGKI-NNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFK 232
Query: 550 MNNQYLCNRPISVSYA 597
M+N + +R I V ++
Sbjct: 233 MDNVLIDDRRIHVDFS 248
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/75 (36%), Positives = 35/75 (46%)
Frame = +1
Query: 382 NLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQ 561
NL EK L D F FG I + V P +GNS+ F FI F E + AA + + N
Sbjct: 82 NLSSYTTEKDLRDVFGEFGEINKCDLVYDRP-SGNSRGFGFIYFNLIEDATAARDKLCNT 140
Query: 562 YLCNRPISVSYAFKK 606
L I V ++ K
Sbjct: 141 DLDGHKIRVDFSLTK 155
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+FIG L + + L D F FG + + VMRDP T ++ F FI F + D +
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNEC-MVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 550 MNNQYLCNRPISVSYAFKK 606
++ L + I AF K
Sbjct: 106 REHE-LDGKKIDPKVAFPK 123
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/79 (31%), Positives = 37/79 (46%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEA 549
+FIG L + + L D F FG + + VMRDP T ++ F FI F + D +
Sbjct: 47 MFIGGLSWQTTAENLRDYFGRFGEVNEC-MVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 550 MNNQYLCNRPISVSYAFKK 606
++ L + I AF K
Sbjct: 106 REHE-LDGKKIDPKVAFPK 123
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 37.9 bits (84), Expect = 0.010
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Frame = +1
Query: 403 EKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPI 582
EK L F FG +L+ +V R+ TGN K +A++ F + ++ A E+MN + + +
Sbjct: 45 EKELLGYFRQFGNVLRI-RVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNGYLMFEQRL 103
Query: 583 SVSYAFKKDV--KGERHG 630
+ K ++ K RHG
Sbjct: 104 GCT-VMKPELIPKAMRHG 120
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 37.9 bits (84), Expect = 0.010
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
G +++G++ +V E L F G I ++M DP +G S+ +AF+ + + E + AA
Sbjct: 199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDL-RLMMDPMSGASRGYAFVTYCNKEDAAAA 257
Query: 541 IEAMN-NQYLCNRPISVS 591
+ + ++ +P+ V+
Sbjct: 258 AKTYDGHEISTGKPLKVN 275
Score = 34.3 bits (75), Expect = 0.12
Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKL-YGKPVRVNKASAHQKNLDVGANVFIGNL--DPE 396
R Y FV + +EDA A K + ++ GKP++VN + A+ + +FIGN+
Sbjct: 241 RGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVNVSIANTR-------LFIGNIPKTKS 293
Query: 397 VDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFE-ASD 534
DE L A GV+ + D E ++ F F++F + ASD
Sbjct: 294 KDEILEELKTHAEGVVDVIVYSVPDNEKIKNRGFCFVDFIDHKTASD 340
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical protein
T23F6.4 protein.
Length = 872
Score = 35.1 bits (77), Expect = 0.068
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 17/155 (10%)
Frame = +1
Query: 232 YGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDVGA--------------- 366
+GFV+F DA A+K M L G + + +H++N D GA
Sbjct: 691 FGFVQFYTAFDAKTALKDMQGELLDGHSLELK--ISHRENADKGALKRKEVKQKEQGECT 748
Query: 367 NVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDP-ETGNSKAFAFINFASFEASDAAI 543
+ + NL E K + F FG + +T ++ + P + + F F++F S + + A
Sbjct: 749 KLLVRNLPFEASVKEVETLFETFGAV-KTIRIPKKPGQKQQHRGFGFVDFISADEAHRAF 807
Query: 544 EAM-NNQYLCNRPISVSYAFKKDVKGERHGSXAER 645
+++ ++ +L R + + +A + E AE+
Sbjct: 808 DSLVHSTHLYGRRLVLEWAKDDETVEELREKTAEK 842
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +1
Query: 352 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEAS 531
+D +FIG L + E + + +FG L+ + D + GNSK +AF + +
Sbjct: 287 VDSANKIFIGGLPNYLTEDQVKELLCSFGP-LKAFSLNVDSQ-GNSKGYAFAEYLDPTLT 344
Query: 532 DAAIEAMNNQYLCNRPISVSYA 597
D AI +N L ++ + V A
Sbjct: 345 DQAIAGLNGMQLGDKQLVVQLA 366
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 340 HQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFAS 519
H + +D+ VF+G L V + + FS FGV+L + D + G K A + F
Sbjct: 311 HNRIIDIHRTVFLGGLPRIVTAEEIAQMFSEFGVVLLV-TIDIDQDYGYPKGAARVTFER 369
Query: 520 FEASDAAIE 546
A + A+E
Sbjct: 370 DSAFNRALE 378
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 340 HQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFAS 519
H + +D+ VF+G L V + + FS FGV+L + D + G K A + F
Sbjct: 311 HNRIIDIHRTVFLGGLPRIVTAEEIAQMFSEFGVVLLV-TIDIDQDYGYPKGAARVTFER 369
Query: 520 FEASDAAIE 546
A + A+E
Sbjct: 370 DSAFNRALE 378
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +1
Query: 352 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEAS 531
+D +FIG L + E + + +FG L+ + D + GNSK +AF + +
Sbjct: 287 VDSANKIFIGGLPNYLTEDQVKELLCSFGP-LKAFSLNVDSQ-GNSKGYAFAEYLDPTLT 344
Query: 532 DAAIEAMNNQYLCNRPISVSYA 597
D AI +N L ++ + V A
Sbjct: 345 DQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +1
Query: 352 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEAS 531
+D +FIG L + E + + +FG L+ + D + GNSK +AF + +
Sbjct: 262 VDSANKIFIGGLPNYLTEDQVKELLCSFGP-LKAFSLNVDSQ-GNSKGYAFAEYLDPTLT 319
Query: 532 DAAIEAMNNQYLCNRPISVSYA 597
D AI +N L ++ + V A
Sbjct: 320 DQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 33.9 bits (74), Expect = 0.16
Identities = 23/82 (28%), Positives = 39/82 (47%)
Frame = +1
Query: 352 LDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEAS 531
+D +FIG L + E + + +FG L+ + D + GNSK +AF + +
Sbjct: 265 VDSANKIFIGGLPNYLTEDQVKELLCSFGP-LKAFSLNVDSQ-GNSKGYAFAEYLDPTLT 322
Query: 532 DAAIEAMNNQYLCNRPISVSYA 597
D AI +N L ++ + V A
Sbjct: 323 DQAIAGLNGMQLGDKQLVVQLA 344
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 340 HQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFAS 519
H + +D+ VF+G L V + + FS FGV+L + D + G K A + F
Sbjct: 97 HNRIIDIHRTVFLGGLPRIVTAEEIAQMFSEFGVVLLV-TIDIDQDYGYPKGAARVTFER 155
Query: 520 FEASDAAIE 546
A + A+E
Sbjct: 156 DSAFNRALE 164
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +1
Query: 340 HQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFAS 519
H + +D+ VF+G L V + + FS FGV+L + D + G K A + F
Sbjct: 311 HNRIIDIHRTVFLGGLPRIVTAEEIAQMFSEFGVVLLV-TIDIDQDYGYPKGAARVTFER 369
Query: 520 FEASDAAIE 546
A + A+E
Sbjct: 370 DSAFNRALE 378
>U80455-3|AAO38606.1| 145|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform c protein.
Length = 145
Score = 33.5 bits (73), Expect = 0.21
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 361 GANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAA 540
GAN+FI +L + + L +TF+ FG IL + KV D T SK F F F+ ++
Sbjct: 75 GANLFIYHLPQDFGDSDLINTFAPFGGIL-SAKVFIDKVTNLSKCFG--EFYLFQKKNSK 131
Query: 541 I 543
I
Sbjct: 132 I 132
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 33.5 bits (73), Expect = 0.21
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQKNLDV 360
+ YGFV F ED A++ M+ + +P+++ K++ ++N+DV
Sbjct: 244 KGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAWKERNIDV 288
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 32.3 bits (70), Expect = 0.48
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +1
Query: 355 DVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASD 534
+ G V++ ++ + L F +G I Q+ + DP+TG + FA I F S + ++
Sbjct: 22 NTGQTVYLTHVKWVTGKSQLEHYFKRYGSI-QSVNMFYDPDTGLHRGFASITFDSKDGAN 80
Query: 535 AAIE 546
AIE
Sbjct: 81 KAIE 84
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 424 FSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 546
+S FG I VMRDP T S+ F F+ F+ DAA++
Sbjct: 5 YSQFGEITDII-VMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 424 FSAFGVILQTPKVMRDPETGNSKAFAFINFASFEASDAAIE 546
+S FG I VMRDP T S+ F F+ F+ DAA++
Sbjct: 5 YSQFGEITDII-VMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 325 NKASAHQKNLDVGANVFIGNLDPEVDEKLLYDTFSAFGVILQTPKVMRDPETGNSKAFAF 504
N A + + D +F+G ++ E E L F A+G I + M E G + +AF
Sbjct: 91 NPAENPRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKL--TMVHDEAGKPRGYAF 148
Query: 505 INFA 516
I ++
Sbjct: 149 IEYS 152
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 457 KVMRDPETGNSKAFAFINFASFEASDAAIEAMNNQYLCNRPISVSYAFKKDVK 615
K++ NSK AFI F + E + AA N + N + V YA ++ K
Sbjct: 665 KILHASGQPNSKKRAFITFGTVEDAQAAFAKSNGLKVNNHLVDVFYARHQETK 717
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 370 VFIGNLDPEVDEKLLYDTFSAFGVIL 447
VFIG L +V E+ ++ TF AFG +L
Sbjct: 247 VFIGGLPIDVSEEQVWATFGAFGKVL 272
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 226 RXYGFVEFMGEEDADYAIKVMNMIKLYGKPVRVNKASAHQ 345
R YG+VE+ EDA+ +IK M+ ++ G V V Q
Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEMTIGRQ 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,532
Number of Sequences: 27780
Number of extensions: 362622
Number of successful extensions: 1058
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -