Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B16
(906 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0080 + 587674-588510 30 0.45
09_04_0506 - 18188785-18190599 31 0.95
08_02_1049 + 23944526-23945473 31 1.7
02_05_0002 - 24849189-24849825,24850267-24850328 30 2.2
04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078 29 3.8
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152... 29 3.8
08_02_1084 - 24232968-24234779 29 5.1
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 29 5.1
02_05_0686 - 30900748-30902167,30903442-30904742 24 5.6
07_03_1691 - 28726307-28726323,28726588-28726953,28727483-287275... 29 6.7
01_03_0005 + 11568545-11569119,11569179-11569191 29 6.7
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect(2) = 0.45
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -2
Query: 533 PXPXGGGGFFXXKXPPPPPP 474
P GG G F PPPPPP
Sbjct: 79 PPRLGGDGMFRRPPPPPPPP 98
Score = 21.4 bits (43), Expect(2) = 0.45
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = -2
Query: 491 PPPPPPXXXKK 459
PPPPPP ++
Sbjct: 116 PPPPPPLFTRR 126
>09_04_0506 - 18188785-18190599
Length = 604
Score = 31.5 bits (68), Expect = 0.95
Identities = 20/64 (31%), Positives = 22/64 (34%)
Frame = -2
Query: 665 WGSPRXGGXKNXPPXGGGXXXXXXXPRGXGFFLGGXXXGXKKKXPXPXGGGGFFXXKXPP 486
+G R GG P GGG RG G G G + P GG G
Sbjct: 309 YGGGRGGGG-GGPGGGGGGGGGGNWGRGGGGMGGRGQAGNMRNRMGPVGGRGLMGNGGMV 367
Query: 485 PPPP 474
PPP
Sbjct: 368 APPP 371
>08_02_1049 + 23944526-23945473
Length = 315
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 475 GGGGGGFXXXKXPPPPXGXGXFFXXPXXXPPKK 573
GGGGGGF PPP F PP+K
Sbjct: 176 GGGGGGFSGFAPRPPPQQPPPSFAMLSTAPPRK 208
>02_05_0002 - 24849189-24849825,24850267-24850328
Length = 232
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -2
Query: 545 KKKXPXPX---GGGGFFXXKXPPPPPP 474
K+K P P GGGG PPPPPP
Sbjct: 200 KRKKPQPADTSGGGGHPHPPPPPPPPP 226
>04_04_1149 + 31273203-31273695,31274016-31275165,31275617-31277078
Length = 1034
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = -2
Query: 662 GSPRXGGXKNXPPXGGGXXXXXXXPRGXGFFLGGXXXGXKKKXPXPXGGGG 510
G P GG + P GG G G+ GG G + GGGG
Sbjct: 47 GPPGGGGGRGYEPGGGRGYGGGGGGGGRGYGGGGGGGGYESGGGRGYGGGG 97
>02_05_0962 +
33114226-33114684,33114806-33114853,33115166-33115286,
33115760-33116008,33116149-33116302,33116493-33116985,
33117524-33117596,33118285-33118343
Length = 551
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 521 GGGGFFXXKXPPPPPP 474
GGGGF + PPPPP
Sbjct: 57 GGGGFLRLRSAPPPPP 72
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 475 GGGGGGFXXXKXPPPP 522
GGGGGGF + PPP
Sbjct: 55 GGGGGGFLRLRSAPPP 70
>08_02_1084 - 24232968-24234779
Length = 603
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/58 (27%), Positives = 19/58 (32%)
Frame = -2
Query: 647 GGXKNXPPXGGGXXXXXXXPRGXGFFLGGXXXGXKKKXPXPXGGGGFFXXKXPPPPPP 474
GG + P GG RG G G + + P GG G PPP
Sbjct: 306 GGGRGGGPGGGAGGGGGNWGRGGGGMGRGPAGNMRNRMGGPAGGRGIMGNGGMVAPPP 363
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 29.1 bits (62), Expect = 5.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 521 GGGGFFXXKXPPPPPP 474
GGGG+ PPPPPP
Sbjct: 93 GGGGWVQLPPPPPPPP 108
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 23.8 bits (49), Expect(2) = 5.6
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -2
Query: 491 PPPPPPXXXKK 459
PPPPPP KK
Sbjct: 364 PPPPPPPGGKK 374
Score = 23.4 bits (48), Expect(2) = 5.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 533 PXPXGGGGFFXXKXPPPPPP 474
P P G K PPPPPP
Sbjct: 339 PPPKGPPPPPPAKGPPPPPP 358
>07_03_1691 -
28726307-28726323,28726588-28726953,28727483-28727567,
28728255-28728387,28729793-28730328
Length = 378
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 533 PXPXGGGGFFXXKXPPPPPPXXXKKKK 453
P GGGG PPPPPP ++ +
Sbjct: 31 PSCGGGGGGAGPTPPPPPPPPHHRRAR 57
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 28.7 bits (61), Expect = 6.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 475 GGGGGGFXXXKXPPPPXGXG 534
GGGGGG PPPP G
Sbjct: 81 GGGGGGTVMYTSPPPPYSGG 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,093
Number of Sequences: 37544
Number of extensions: 296184
Number of successful extensions: 3631
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3183
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -