Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B16
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 32 0.49
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.86
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.86
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 31 1.1
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 31 1.1
AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical... 31 1.1
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.5
AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical... 31 1.5
Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical pr... 29 3.5
X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2 prot... 29 3.5
AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical ... 29 6.0
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 32.3 bits (70), Expect = 0.49
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +1
Query: 478 GGGGGFXXXKXPPPPXGXGXFFXXPXXXPPKKNPXP 585
GG GGF PPPP G G + P PP P P
Sbjct: 428 GGPGGFG----PPPPGGPGAYGPPPTGFPPVGAPPP 459
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = -2
Query: 662 GSPRXGGXKNXPPXGGGXXXXXXXPRGXGFFLGGXXXGXKKKXPXPXGGGGFFXXKXPPP 483
G GG + GGG G GG G GGGG+ PP
Sbjct: 247 GGSSGGGYSSGGSSGGGYSTGGGGGYAGG---GGGGGGSSGGYAGSSGGGGYSAPAAAPP 303
Query: 482 PPP 474
PPP
Sbjct: 304 PPP 306
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.86
Identities = 19/63 (30%), Positives = 21/63 (33%)
Frame = -2
Query: 662 GSPRXGGXKNXPPXGGGXXXXXXXPRGXGFFLGGXXXGXKKKXPXPXGGGGFFXXKXPPP 483
G GG + GGG G GG G GGGG+ PP
Sbjct: 247 GGSSGGGYSSGGSSGGGYSTGGGGGYAGG---GGGGGGSSGGYAGSSGGGGYSAPAAAPP 303
Query: 482 PPP 474
PPP
Sbjct: 304 PPP 306
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 478 GGGGGFXXXKXPPPPXGXGXFFXXPXXXPP 567
G GGG PPP G G F P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -2
Query: 578 GFFLGGXXXGXKKKXPXPXGGGGFFXXKXPPPPPP 474
G++ G P P G GGF PPPP P
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 31.1 bits (67), Expect = 1.1
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +1
Query: 478 GGGGGFXXXKXPPPPXGXGXFFXXPXXXPP 567
G GGG PPP G G F P PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPPP 681
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -2
Query: 578 GFFLGGXXXGXKKKXPXPXGGGGFFXXKXPPPPPP 474
G++ G P P G GGF PPPP P
Sbjct: 649 GWYGSGGGSSMPMPVPPPGGLGGFMPPPPPPPPMP 683
>AC024790-13|AAL32247.1| 311|Caenorhabditis elegans Hypothetical
protein Y47D7A.13 protein.
Length = 311
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 457 FFFXXXGGGGGGFXXXKXPPPPXGXG 534
F F GGGGGG PPPP G G
Sbjct: 16 FLFNLLGGGGGG-CCAPPPPPPCGGG 40
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = -2
Query: 620 GGGXXXXXXXPRGXGFFLGGXXXGXKKKXPXPXGGGGFFXXKXPPPPPP 474
GGG G G GG G GGGG PPPPPP
Sbjct: 68 GGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPP 116
Score = 24.6 bits (51), Expect(2) = 7.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 475 GGGGGGFXXXKXPPPPXGXG 534
GGGGG PPPP G
Sbjct: 43 GGGGGCGGGCAPPPPPPACG 62
Score = 22.2 bits (45), Expect(2) = 7.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = +1
Query: 457 FFFXXXGGGGGG 492
F F GGGGGG
Sbjct: 18 FLFPSGGGGGGG 29
>AC025721-11|AAK29900.1| 78|Caenorhabditis elegans Hypothetical
protein Y48G8AL.12 protein.
Length = 78
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 457 FFFXXXGGGGGGFXXXKXPPPP 522
F F GGGGGG PPPP
Sbjct: 17 FLFPSAGGGGGGCGCGAPPPPP 38
>Z81088-5|CAB03133.1| 215|Caenorhabditis elegans Hypothetical
protein F53F1.5 protein.
Length = 215
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 527 PXGGGGFFXXKXPPPPPP 474
P GGGG PPPPPP
Sbjct: 20 PSGGGGGCGCAPPPPPPP 37
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 460 FFXXXGGGGGGFXXXKXPPPPXGXGXFFXXPXXXP 564
F GGGGG PPPP G G P P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGAPALPPLQLP 51
>Z81088-4|CAB03125.1| 105|Caenorhabditis elegans Hypothetical
protein F53F1.4 protein.
Length = 105
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 527 PXGGGGFFXXKXPPPPPP 474
P GGGG PPPPPP
Sbjct: 20 PSGGGGGCGCAPPPPPPP 37
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 460 FFXXXGGGGGGFXXXKXPPPPXGXGXFFXXPXXXP 564
F GGGGG PPPP G G P P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGGPSLPPLQLP 51
>X74838-1|CAA52832.1| 231|Caenorhabditis elegans cuticlin 2
protein.
Length = 231
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -2
Query: 527 PXGGGGFFXXKXPPPPPP 474
P GGGG PPPPPP
Sbjct: 20 PSGGGGGCGCAPPPPPPP 37
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +1
Query: 460 FFXXXGGGGGGFXXXKXPPPPXGXGXFFXXPXXXP 564
F GGGGG PPPP G G P P
Sbjct: 17 FLLPSGGGGGCGCAPPPPPPPCGCGAPALPPLQLP 51
>AC024809-7|AAF59540.1| 315|Caenorhabditis elegans Hypothetical
protein Y53G8AR.9 protein.
Length = 315
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +1
Query: 475 GGGGGGFXXXKXPPPPXGXG 534
GG GGG PPPP G G
Sbjct: 202 GGSGGGSGRFPPPPPPYGGG 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,364,136
Number of Sequences: 27780
Number of extensions: 160895
Number of successful extensions: 1443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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