Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B12
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 58 1e-09
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 31 0.28
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 4.5
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 27 4.5
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ... 27 4.5
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 27 4.5
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 6.0
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 6.0
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 7.9
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.9
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 7.9
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 58.4 bits (135), Expect = 1e-09
Identities = 41/152 (26%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Frame = +2
Query: 278 IKPGLNEEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPDVALQMQET 457
IK + E + +++ + +D +V+L++++ + E DL+ LA + + ++
Sbjct: 47 IKSPIIETADTADQENESEGSD-EVELSDLE-GIELEEDADLIRK-RKLAINNTVALENI 103
Query: 458 AQRRKNLKENSKGNIQYDPTQDPVL-----NEFKRENLIHRQAQAAVVEGLKKLKELGIA 622
+R K + S Q T++P++ ++ RE ++Q ++V KL+E +
Sbjct: 104 YERIKYPDDISFVENQAVTTKEPIIIENVEDDLARELAFYKQGVSSVKAAFAKLREANVL 163
Query: 623 TRRPDDYFAEMAKTDEHMQKVRKNLMAKQAAQ 718
RP DYFAEM K+D+HM+KVR+ L+ + A+
Sbjct: 164 ISRPHDYFAEMLKSDDHMEKVRQELIKEATAK 195
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 30.7 bits (66), Expect = 0.28
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 661 DR*AHAEST*EFDGQASSTVA-RRESRQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLKR 837
DR H + + D SS + +RE+ +LREQ K+ I + KQ +E K L L+
Sbjct: 634 DRYEHPKVLEDNDSTISSLESLKRENEELREQLKVEHEENISMQ-KQLSELKGELNTLRS 692
Query: 838 VRK 846
RK
Sbjct: 693 ARK 695
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 192 TFWLKKWFNKNSENHLKILEPMLVIRRNNNHKMYFS 85
TF K+WF+K+ E + LE + ++RN+ + M+ S
Sbjct: 1561 TFLQKEWFDKDDELN---LEEKIALQRNSVYAMFNS 1593
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.6 bits (56), Expect = 4.5
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 290 LNEEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIA--PLAPDVALQMQETAQ 463
L E+IEK EKK + + K + +++L L + E +DL IA P+ A+ +
Sbjct: 43 LVEKIEKWEKKVSKFTENSKSEKRKLQLEL-FQEIIDLKKCIAFKPIIGKNAID-NNISD 100
Query: 464 RRKNLKENSK 493
+KNL N K
Sbjct: 101 LKKNLHSNKK 110
>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 302 IEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTT-IAPLAPDVALQMQETAQRRKNL 478
+EK ++Y + +A +++ L + N E+L L+ + L +QE+ + KN
Sbjct: 1 MEKELEEYKSQLALVQISLQKTPQN----EELQLLENDLKELISLTENLLQESVENDKNT 56
Query: 479 KENSKGNIQYDPTQDPVLNEFKRENLI 559
+NS+ + T PV +F NL+
Sbjct: 57 FQNSQNGVAGFNTSKPVHIDFTPGNLV 83
>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
reductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 189 FWLKKWFNKNSENHLKILEPMLVIRRNNNHK 97
FW+ KW +++ E LKI+ + RN K
Sbjct: 304 FWVTKWKSEHPEEFLKIIHKVEDFYRNGTLK 334
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 392 KLDLVTTIAPLAPDVALQMQETAQRRKNLKENS 490
K+ + ++P++PD ALQ ++ K +E+S
Sbjct: 522 KVGIADVLSPISPDAALQSDGPLKKAKEPEESS 554
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 140 IFKWFSEFLLNHFFNQKVKMTD 205
+F WFS F+LNH Q++ D
Sbjct: 248 LFCWFSFFILNHPVKQRIFSID 269
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 25.8 bits (54), Expect = 7.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 254 QEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLT 361
Q AFA + G E + +IE YTN V K+ LT
Sbjct: 18 QGAFATLVAPIGDLEHLSEIELLYTNRVLPSKIPLT 53
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 290 LNEEIEKIEKKYTNNVADLK 349
L+ EI KI+KKY N + ++K
Sbjct: 427 LHLEISKIQKKYQNQIENMK 446
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -1
Query: 824 SNICFFSAACFNFVSICTLLAIFFC 750
S F S+ FNF C + +F C
Sbjct: 8 STSAFVSSLVFNFAIFCAFIGLFLC 32
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,928,273
Number of Sequences: 5004
Number of extensions: 52858
Number of successful extensions: 217
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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