Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B12
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-11|AAA68370.2|  340|Caenorhabditis elegans Hypothetical p...    70   2e-12
Z81085-1|CAB03112.3|  263|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class ho...    30   1.9  
Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z81449-11|CAD44106.2|  410|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z81449-10|CAB03766.4|  419|Caenorhabditis elegans Hypothetical p...    29   5.7  
Z48241-6|CAD44100.2|  410|Caenorhabditis elegans Hypothetical pr...    29   5.7  
Z48241-5|CAA88286.4|  419|Caenorhabditis elegans Hypothetical pr...    29   5.7  
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   5.7  
AC006648-8|AAF39857.1|  302|Caenorhabditis elegans Btb and math ...    29   5.7  
Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical p...    28   7.5  
U41994-12|AAK31522.1|  118|Caenorhabditis elegans Hypothetical p...    28   7.5  
Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U12964-10|AAK93849.2|  140|Caenorhabditis elegans Hypothetical p...    28   9.9  
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge...    28   9.9  

>U28944-11|AAA68370.2|  340|Caenorhabditis elegans Hypothetical
           protein C18A3.3 protein.
          Length = 340

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 56/159 (35%), Positives = 80/159 (50%)
 Frame = +2

Query: 254 QEAFAKGLIKPGLNEEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPD 433
           Q AFA GL+K GLN ++ K ++   N  A++K KL EI  +LPWVE L++VT  + +   
Sbjct: 63  QAAFAAGLLKDGLNIQVAK-KRPIINKSAEMKEKLAEITKDLPWVETLEVVTPHSEMDKK 121

Query: 434 VALQMQETAQRRKNLKENSKGNIQYDPTQDPVLNEFKRENLIHRQAQAAVVEGLKKLKEL 613
           V     +  QR  N  + ++  +Q       +LN                  G+K L+  
Sbjct: 122 VE---NDDFQRELNFYKQAEKAVQI--AYPRLLN-----------------LGIKVLR-- 157

Query: 614 GIATRRPDDYFAEMAKTDEHMQKVRKNLMAKQAAQSRVE 730
                 P DY+AEMAK+D HMQKVRK L+  Q  + R E
Sbjct: 158 ------PTDYYAEMAKSDTHMQKVRKRLLGIQEMKERQE 190



 Score = 35.9 bits (79), Expect = 0.037
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +1

Query: 724 RRES-RQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLKRVRKGKAQ 858
           R+E+ R++RE+KK A +VQ +    +  EKK + E +K+ +KG  Q
Sbjct: 188 RQEAFRRIREEKKFAVKVQKEVLAAKNTEKKNLAEAVKKHKKGMKQ 233


>Z81085-1|CAB03112.3|  263|Caenorhabditis elegans Hypothetical
           protein F46F3.1 protein.
          Length = 263

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 411 QSRLWLQTLRYKCKKQHREGRI 476
           Q ++W Q  RYKCK+Q +E ++
Sbjct: 141 QVKIWFQNQRYKCKRQEKEKKM 162


>Z79757-1|CAB60999.1|  299|Caenorhabditis elegans Hypothetical
           protein F55B12.1 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 411 QSRLWLQTLRYKCKKQHRE 467
           Q ++W Q  RYKCK+Q +E
Sbjct: 193 QVKIWFQNHRYKCKRQEKE 211


>AF026056-1|AAB81844.1|  298|Caenorhabditis elegans NK-2 class
           homeodomain protein protein.
          Length = 298

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 411 QSRLWLQTLRYKCKKQHRE 467
           Q ++W Q  RYKCK+Q +E
Sbjct: 193 QVKIWFQNHRYKCKRQEKE 211


>Z83216-12|CAB05675.2|  323|Caenorhabditis elegans Hypothetical
           protein C08F11.4 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -2

Query: 610 FFELFKSFYYSSLCLSMD*ILTLKLIQY 527
           F  +F +F++ S+CL  + +L +KLI++
Sbjct: 201 FLLMFNTFFWFSICLGFNLVLIVKLIKF 228


>Z81449-11|CAD44106.2|  410|Caenorhabditis elegans Hypothetical
           protein C32A3.3b protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = +2

Query: 296 EEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPDVALQMQETAQRRKN 475
           EE+E++EK Y  ++ DL+ ++ +  +N    E  +L TT++ L P+ A     T+ R  +
Sbjct: 88  EELEQVEKTYRKDIDDLQ-QMVKSLVN----ENRNLSTTVSSL-PNHADSPVSTSMREAD 141

Query: 476 LK 481
           LK
Sbjct: 142 LK 143


>Z81449-10|CAB03766.4|  419|Caenorhabditis elegans Hypothetical
           protein C32A3.3a protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = +2

Query: 296 EEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPDVALQMQETAQRRKN 475
           EE+E++EK Y  ++ DL+ ++ +  +N    E  +L TT++ L P+ A     T+ R  +
Sbjct: 97  EELEQVEKTYRKDIDDLQ-QMVKSLVN----ENRNLSTTVSSL-PNHADSPVSTSMREAD 150

Query: 476 LK 481
           LK
Sbjct: 151 LK 152


>Z48241-6|CAD44100.2|  410|Caenorhabditis elegans Hypothetical
           protein C32A3.3b protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = +2

Query: 296 EEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPDVALQMQETAQRRKN 475
           EE+E++EK Y  ++ DL+ ++ +  +N    E  +L TT++ L P+ A     T+ R  +
Sbjct: 88  EELEQVEKTYRKDIDDLQ-QMVKSLVN----ENRNLSTTVSSL-PNHADSPVSTSMREAD 141

Query: 476 LK 481
           LK
Sbjct: 142 LK 143


>Z48241-5|CAA88286.4|  419|Caenorhabditis elegans Hypothetical
           protein C32A3.3a protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/62 (32%), Positives = 36/62 (58%)
 Frame = +2

Query: 296 EEIEKIEKKYTNNVADLKVKLTEIKLNLPWVEKLDLVTTIAPLAPDVALQMQETAQRRKN 475
           EE+E++EK Y  ++ DL+ ++ +  +N    E  +L TT++ L P+ A     T+ R  +
Sbjct: 97  EELEQVEKTYRKDIDDLQ-QMVKSLVN----ENRNLSTTVSSL-PNHADSPVSTSMREAD 150

Query: 476 LK 481
           LK
Sbjct: 151 LK 152


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = -2

Query: 670 LICLSHFSKIIIRSSSGNTKFFELFKSFYYSSLCLSMD*ILTLKLIQ-YWILSRIILNIT 494
           ++ ++ F  + +   +G  ++  +F S  + ++ ++++ +    LI  Y   ++I + I 
Sbjct: 114 MLVVNSFEGLELLIIAGFMEYHYMF-SVVFGAVAVAIERLAASVLIDNYESTNKIFIPIA 172

Query: 493 LTIFFQILPSLCCFLHL 443
           LT+FFQI+   C  L L
Sbjct: 173 LTVFFQIIAITCSCLAL 189


>AC006648-8|AAF39857.1|  302|Caenorhabditis elegans Btb and math
           domain containingprotein 1 protein.
          Length = 302

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 727 RESRQLREQKKIAKRVQIDTKLKQAAEKKQMLEQLK 834
           +  + +R+Q +IAK+ Q+D   K    K   +E++K
Sbjct: 241 KSEKSMRDQLEIAKKYQLDNLKKSCLSKVNTVEEIK 276


>Z81533-13|CAB04336.2|  323|Caenorhabditis elegans Hypothetical
           protein F36G9.6 protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = -2

Query: 652 FSKIIIRSSSG----NTKFFELFKSFYYSSLCLSMD*ILTLKLIQY 527
           F  I++R++         F  +F +F++ S+C   + +L +KLI++
Sbjct: 183 FGSILLRATGTIFGWTNNFLVMFNTFFWFSICFGFNSVLIVKLIKF 228


>U41994-12|AAK31522.1|  118|Caenorhabditis elegans Hypothetical
           protein F59A6.2 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 724 RRESRQLREQKKIAKRVQIDTKLKQAAEKKQ 816
           +++S Q RE++K+A + + + K KQ  EKK+
Sbjct: 71  QKQSDQKREERKLAAQKRKELKQKQKEEKKE 101


>Z74041-2|CAA98521.1|  237|Caenorhabditis elegans Hypothetical
           protein T03F7.6 protein.
          Length = 237

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 592 SFYYSSLCLSMD*ILTLKLIQYWILSRIILNITLTIF 482
           S + S  CL    I  + L +Y++L+   LN+T T+F
Sbjct: 141 SLFLSFWCLIFGIIPFIYLSEYFVLANTTLNLTATVF 177


>U12964-10|AAK93849.2|  140|Caenorhabditis elegans Hypothetical
           protein F26F4.9a protein.
          Length = 140

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 718 VARRESRQLREQKKIAKRVQ--IDTKLKQAAEKKQ 816
           VAR E R+L EQKK  ++VQ     K++ A +K+Q
Sbjct: 42  VAREEERRLIEQKKFDRQVQDREADKMRLARQKQQ 76


>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 2 protein.
          Length = 1032

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 278 IKPGLNEEIEKIEKKYTNNVADL 346
           I+  +   ++++EKKY N+VAD+
Sbjct: 280 IREDVTSTVDRVEKKYNNSVADM 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,060,305
Number of Sequences: 27780
Number of extensions: 291820
Number of successful extensions: 1383
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)