Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B11
(983 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 33 0.46
07_03_1267 + 25318220-25318407,25318674-25318844,25319086-253191... 32 0.81
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.4
05_06_0282 + 26915249-26915881 29 4.3
07_03_1136 + 24218601-24218734,24218769-24219906 29 5.7
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 5.7
06_03_1310 + 29238644-29240260 28 9.9
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 28 9.9
02_02_0240 + 8196140-8198248,8198381-8198650 28 9.9
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.7 bits (71), Expect = 0.46
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 775 PXXXXGGXGGXPPXPXGGXXKTPPPPPXXG 686
P G PP P GG PPPPP G
Sbjct: 1100 PPPSIGAGAPPPPPPPGGITGVPPPPPIGG 1129
Score = 31.9 bits (69), Expect = 0.81
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -1
Query: 776 PXXXXGGXGGXP-PPPXGGXXKNTPPP 699
P GG GG P PPP G TPPP
Sbjct: 1150 PPPPVGGLGGPPAPPPPAGFRGGTPPP 1176
Score = 29.5 bits (63), Expect = 4.3
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 775 PXXXXGGXGGXPPXPXGGXXKTPPPPPXXG 686
P G G PP P GG P PPP G
Sbjct: 1139 PPLPEGIGGVPPPPPVGGLGGPPAPPPPAG 1168
Score = 29.1 bits (62), Expect = 5.7
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = -2
Query: 760 GGXGGXPPXPXGGXXKTPPPPPXXG 686
G G PP P G PPPPP G
Sbjct: 1093 GDYGVAPPPPSIGAGAPPPPPPPGG 1117
Score = 28.7 bits (61), Expect = 7.5
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 687 PXXGGGGGVFXXPPXGXGGXPPXPP 761
P G GGV PP G G PP PP
Sbjct: 1140 PLPEGIGGVPPPPPVGGLGGPPAPP 1164
Score = 28.7 bits (61), Expect = 7.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = -2
Query: 775 PXXXXGGXGGXPPXPXGGXXKTPPPPP 695
P G GG PP G PPPPP
Sbjct: 1163 PPPPAGFRGGTPPPNAHGGVAPPPPPP 1189
>07_03_1267 +
25318220-25318407,25318674-25318844,25319086-25319188,
25319394-25319885,25320723-25321156,25321333-25321388,
25321711-25321775,25322139-25322147
Length = 505
Score = 31.9 bits (69), Expect = 0.81
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 760 GGXGGXPPXPXGGXXKTPPPP 698
GG GG P P GG PPPP
Sbjct: 79 GGGGGEMPPPYGGAAAAPPPP 99
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 1.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 775 PXXXXGGXGGXPPXPXGGXXKTPPPPPXXG 686
P G PP P GG PPPPP G
Sbjct: 355 PPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
>05_06_0282 + 26915249-26915881
Length = 210
Score = 29.5 bits (63), Expect = 4.3
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +3
Query: 696 GGGGGVFXXPPXGXGGXPPXP 758
GGGGGV PP G G PP P
Sbjct: 76 GGGGGVLRRPP-GRGPPPPGP 95
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 29.1 bits (62), Expect = 5.7
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +3
Query: 687 PXXGGGGGVFXXPPXGXGGXPPXPPXXXXG 776
P GGGGG PP GG PP G
Sbjct: 109 PGGGGGGGPPSLPPGAGGGGGARPPAPGGG 138
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 29.1 bits (62), Expect = 5.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -2
Query: 742 PPXPXGGXXKTPPPPP 695
PP P GG PPPPP
Sbjct: 296 PPPPVGGTQPPPPPPP 311
>06_03_1310 + 29238644-29240260
Length = 538
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 761 GGXGGXPPPPXGGXXKNTPPPP 696
GG G P PP G ++PPPP
Sbjct: 490 GGGGKLPFPPVHGVAYSSPPPP 511
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 28.3 bits (60), Expect = 9.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -2
Query: 760 GGXGGXPPXPXGGXXKTPPPPP 695
GG G PP G PPPPP
Sbjct: 55 GGGGRAPPRAAGKSPAPPPPPP 76
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 28.3 bits (60), Expect = 9.9
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 743 PPPPXGGXXKNTPPP 699
PPPP GG K PPP
Sbjct: 23 PPPPPGGGAKPEPPP 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,191
Number of Sequences: 37544
Number of extensions: 312992
Number of successful extensions: 4214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3717
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2870111300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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