Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B09
(906 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical ... 63 3e-10
U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical pr... 44 2e-04
AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical ... 44 2e-04
AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormo... 44 2e-04
U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical pr... 41 0.001
L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeo... 33 0.28
AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene... 33 0.28
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 32 0.65
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 31 0.86
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 31 0.86
Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical pr... 30 2.6
X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein ( Caeno... 29 3.5
U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical pr... 29 3.5
U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical ... 29 3.5
AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical ... 29 3.5
AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical ... 29 3.5
AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical ... 29 3.5
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 29 6.0
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 29 6.0
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 29 6.0
>AF098501-8|AAC67403.1| 459|Caenorhabditis elegans Hypothetical
protein H28G03.4 protein.
Length = 459
Score = 62.9 bits (146), Expect = 3e-10
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Frame = -1
Query: 552 YVAMIEEFFIPELQNFSGFNARTW-FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISW 376
Y+ M++ +P ++ F W FQQDGA +H FP + + W
Sbjct: 284 YLDMLKTELMPWVKKH--FKKTKWTFQQDGAPAHKHKNVQAWCESNFPDFIAFNQ----W 337
Query: 375 PPRSPDLTPMDFFLWGYLKAKGYDTNPRSIEALKENIRREMTSIXAVTCRAGXDN 211
PP SPDL PMD+ +W L+AK R+I++LK+++++ + RA D+
Sbjct: 338 PPSSPDLNPMDYSVWSVLEAKACSKPHRNIDSLKDSLKKAWDELDINYLRATVDS 392
>U23174-5|AAC46711.1| 329|Caenorhabditis elegans Hypothetical
protein R10H1.3 protein.
Length = 329
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAKGYDT 301
FQQD AT H SN+ R F K I+ + WP RSPDL P++ LWG L Y
Sbjct: 228 FQQDNATIHVSNST----RDYFKLKKINL---LDWPARSPDLNPIE-NLWGILVRIVYAQ 279
Query: 300 NPR--SIEALKENIRREMTSI 244
N ++ +LK+ I SI
Sbjct: 280 NKTYPTVASLKQGILDAWKSI 300
>AF106576-3|AAK68401.1| 329|Caenorhabditis elegans Hypothetical
protein W07E6.6 protein.
Length = 329
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAKGYDT 301
FQQD AT H SN+ R F K I+ + WP RSPDL P++ LWG L Y
Sbjct: 228 FQQDNATIHVSNST----RDYFKLKKINL---LDWPARSPDLNPIE-NLWGILVRIVYAQ 279
Query: 300 NPR--SIEALKENIRREMTSI 244
N ++ +LK+ I SI
Sbjct: 280 NKTYPTVASLKQGILDAWKSI 300
>AC006671-2|AAO21381.1| 459|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform b protein.
Length = 459
Score = 43.6 bits (98), Expect = 2e-04
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAKGYDT 301
FQQD AT H SN+ R F K I+ + WP RSPDL P++ LWG L Y
Sbjct: 358 FQQDNATIHVSNST----RDYFKLKKINL---LDWPARSPDLNPIE-NLWGILVRIVYAQ 409
Query: 300 NPR--SIEALKENIRREMTSI 244
N ++ +LK+ I SI
Sbjct: 410 NKTYPTVASLKQGILDAWKSI 430
>U49941-9|AAB53871.1| 141|Caenorhabditis elegans Hypothetical
protein K10B3.2 protein.
Length = 141
Score = 41.1 bits (92), Expect = 0.001
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = -1
Query: 486 TWFQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAKGY 307
T F QD AT H SN+ R F K I+ + WP RSPDL P++ LWG L Y
Sbjct: 38 TIFCQDNATIHVSNST----RDYFKLKKINL---LDWPARSPDLNPIE-NLWGILVRIVY 89
Query: 306 DTNPR--SIEALKENIRREMTSI 244
N ++ +LK+ I SI
Sbjct: 90 AQNKTYPTVASLKQGILDAWKSI 112
>L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeobox
protein 16 protein.
Length = 187
Score = 33.1 bits (72), Expect = 0.28
Identities = 27/99 (27%), Positives = 40/99 (40%)
Frame = -1
Query: 729 FDDTPTLQTIKNWVAKFEETGSTLDKPRLGRPRTSRTEQNIDTVTQSIRENPTQSTRKRY 550
+ D P+ K E TGS+ RPRT+ T +D + RE+ T KR
Sbjct: 59 YSDRPSAGPRHRKSRKRESTGSSGSSEEEKRPRTAFTGDQLDRLKTEFRES-RYLTEKRR 117
Query: 549 VAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMP 433
+ E + E Q + WFQ A S +++P
Sbjct: 118 QELAHELGLNESQ------IKIWFQNKRAKLKKSTSSVP 150
>AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene 16
protein.
Length = 187
Score = 33.1 bits (72), Expect = 0.28
Identities = 27/99 (27%), Positives = 40/99 (40%)
Frame = -1
Query: 729 FDDTPTLQTIKNWVAKFEETGSTLDKPRLGRPRTSRTEQNIDTVTQSIRENPTQSTRKRY 550
+ D P+ K E TGS+ RPRT+ T +D + RE+ T KR
Sbjct: 59 YSDRPSAGPRHRKSRKRESTGSSGSSEEEKRPRTAFTGDQLDRLKTEFRES-RYLTEKRR 117
Query: 549 VAMIEEFFIPELQNFSGFNARTWFQQDGATSHTSNTAMP 433
+ E + E Q + WFQ A S +++P
Sbjct: 118 QELAHELGLNESQ------IKIWFQNKRAKLKKSTSSVP 150
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 31.9 bits (69), Expect = 0.65
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 726 DDTPTLQTIKNWVAKFEETGSTLD-KPRLGRPRTSRTEQNIDTVTQSIRENPTQSTRK 556
D++ + T+K W K ++ LD KPR GRPR E +++++ ++P +R+
Sbjct: 7 DNSVSYNTMKFWFEKIKKKNYDLDDKPRSGRPRLDIDED----ISRALEDDPRSMSRE 60
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 31.5 bits (68), Expect = 0.86
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 652 TAVGSPKDVTYGTKHRHSDTVYSRKSDTVN 563
TAV SP+D+++ HSD+ YS + T++
Sbjct: 186 TAVNSPQDISFSHHLHHSDSFYSSSTSTLS 215
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 31.5 bits (68), Expect = 0.86
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 652 TAVGSPKDVTYGTKHRHSDTVYSRKSDTVN 563
TAV SP+D+++ HSD+ YS + T++
Sbjct: 186 TAVNSPQDISFSHHLHHSDSFYSSSTSTLS 215
>Z93374-4|CAB07556.1| 834|Caenorhabditis elegans Hypothetical
protein C06C6.6 protein.
Length = 834
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Frame = -1
Query: 744 KGLHNFDDTPTLQTIKNW--VAKFEETG-------STLDKPRLGRPRTSRTEQNIDTVTQ 592
K + N + P T+K+ + ++ +G STL+ S + + +
Sbjct: 175 KSIGNLNKIPANSTLKSLLKIGSWDTSGFKSFDLISTLNLINSENSTVSDLKNKLAGLAS 234
Query: 591 SIRENPTQSTRKRYVAMIEEF 529
++++ PTQSTRKR++ ++E++
Sbjct: 235 AVQKLPTQSTRKRFIDLLEKW 255
>X01005-1|CAA25498.1| 273|Caenorhabditis elegans protein (
Caenorhabditis eleganstransposable element Tc1. ).
Length = 273
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAK 313
FQQD HTS +R F + + + WP +SPDL P++ LW L+ +
Sbjct: 174 FQQDNDPKHTSLH----VRSWFQRRHVHL---LDWPSQSPDLNPIE-HLWEELERR 221
>U39743-1|AAA80436.2| 314|Caenorhabditis elegans Hypothetical
protein R173.2 protein.
Length = 314
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAK 313
FQQD HTS +R F + + + WP +SPDL P++ LW L+ +
Sbjct: 215 FQQDNDPKHTSLH----VRSWFQRRRVHL---LDWPSQSPDLNPIE-HLWEELERR 262
>U29097-9|AAA68416.2| 343|Caenorhabditis elegans Hypothetical
protein F18C5.7 protein.
Length = 343
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAK 313
FQQD HTS +R F + + + WP +SPDL P++ LW L+ +
Sbjct: 244 FQQDNDPKHTSLH----VRSWFQRRRVHL---LDWPSQSPDLNPIE-HLWEELERR 291
>AF125450-4|AAD12818.1| 343|Caenorhabditis elegans Hypothetical
protein Y39F10A.4 protein.
Length = 343
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAK 313
FQQD HTS +R F + + + WP +SPDL P++ LW L+ +
Sbjct: 244 FQQDNDPKHTSLH----VRSWFQRRHVHL---LDWPSQSPDLNPIE-HLWEKLERR 291
>AF067947-2|AAC19229.2| 273|Caenorhabditis elegans Hypothetical
protein T10B5.9 protein.
Length = 273
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAK 313
FQQD HTS +R F + + + WP +SPDL P++ LW L+ +
Sbjct: 174 FQQDNDPKHTSLH----VRSWFQRRRVHL---LDWPSQSPDLNPIE-HLWEELERR 221
>AF067947-1|AAC19233.1| 273|Caenorhabditis elegans Hypothetical
protein T10B5.1 protein.
Length = 273
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAK 313
FQQD HTS +R F + + + WP +SPDL P++ LW L+ +
Sbjct: 174 FQQDNDPKHTSLH----VRSWFQRRRVHL---LDWPSQSPDLNPIE-HLWEELERR 221
>AF016682-7|AAB66191.2| 343|Caenorhabditis elegans Hypothetical
protein T07D3.8 protein.
Length = 343
Score = 29.5 bits (63), Expect = 3.5
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = -1
Query: 480 FQQDGATSHTSNTAMPVIRQLFPGKVISKRGDISWPPRSPDLTPMDFFLWGYLKAK 313
FQQD HTS +R F + + + WP +SPDL P++ LW L+ +
Sbjct: 244 FQQDNDPKHTSLH----VRSWFQRRHVHL---LDWPSQSPDLNPIE-HLWEELERR 291
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Frame = -1
Query: 408 KVISKRGDISW-----PPRSPDLTPMDFFLW----GYLKAKGYD 304
K K D+ W PP SPDL P D+ L+ Y++ K +D
Sbjct: 251 KTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFD 294
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 28.7 bits (61), Expect = 6.0
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = -3
Query: 667 FDVR*TAVGSPKDVTYGTKHRHSDTVYSRKSDTVN 563
++ + T SP+D+++ HSD+ YS + T++
Sbjct: 180 YEPKDTTANSPQDISFSHHLHHSDSFYSSSTSTLS 214
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Frame = -1
Query: 408 KVISKRGDISW-----PPRSPDLTPMDFFLW----GYLKAKGYD 304
K K D+ W PP SPDL P D+ L+ Y++ K +D
Sbjct: 226 KTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFD 269
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 9/44 (20%)
Frame = -1
Query: 408 KVISKRGDISW-----PPRSPDLTPMDFFLW----GYLKAKGYD 304
K K D+ W PP SPDL P D+ L+ Y++ K +D
Sbjct: 251 KTFQKLQDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFD 294
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,292,538
Number of Sequences: 27780
Number of extensions: 345681
Number of successful extensions: 947
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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