Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B07
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -3

Query: 690 PXXGGEKK*XPPXXGXXKNPPPPPP 616
           P  GG     PP       PPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 18/77 (23%), Positives = 21/77 (27%), Gaps = 2/77 (2%)
 Frame = -2

Query: 694 PPXXXGGKKIKXPXXXGXKK--PPPPPPXXXXXXXFFFFXGXKXRKXPKXKKTPXSPXXX 521
           PP      ++        KK  PPPPPP            G      P     P S    
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAG 349

Query: 520 XXXXXXXXKXPXPXPPP 470
                   +   P PPP
Sbjct: 350 SIPLPPQGRSAPPPPPP 366


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 836 PPFFXXGGPPPXXKKKXKRFPPXKXPLP 919
           PP F   GP P   ++  R  P   PLP
Sbjct: 339 PPMFNSVGPSPPAYEQVARSSPTDIPLP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,489,665
Number of Sequences: 5004
Number of extensions: 14194
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)