Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B07
         (920 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0038 + 13984525-13984917,13985351-13985429,13985535-139856...    36   0.045
06_03_1310 + 29238644-29240260                                         32   0.74 
02_05_0686 - 30900748-30902167,30903442-30904742                       31   1.3  
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647     29   3.9  
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    29   5.2  

>03_03_0038 +
           13984525-13984917,13985351-13985429,13985535-13985628,
           13985712-13985844
          Length = 232

 Score = 35.9 bits (79), Expect = 0.045
 Identities = 23/78 (29%), Positives = 27/78 (34%)
 Frame = -2

Query: 679 GGKKIKXPXXXGXKKPPPPPPXXXXXXXFFFFXGXKXRKXPKXKKTPXSPXXXXXXXXXX 500
           GG + K     G  KPPPPPP              K +K P  +    +           
Sbjct: 23  GGGRRKKAGRRGEAKPPPPPPPQLRGGE------TKKKKKPDARTAAEAAQGLQRHEVER 76

Query: 499 XKXPXPXPPPXGGXKKKR 446
            K P P PPP    K KR
Sbjct: 77  RKKPPPPPPPPKQEKAKR 94


>06_03_1310 + 29238644-29240260
          Length = 538

 Score = 31.9 bits (69), Expect = 0.74
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPPP 616
           PP  GG K   PP  G   + PPPPP
Sbjct: 487 PPQGGGGKLPFPPVHGVAYSSPPPPP 512



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPP 619
           PP   G+K   PP  G   + PPPP
Sbjct: 509 PPPPSGDKLPFPPVYGVAYSSPPPP 533


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/43 (34%), Positives = 15/43 (34%)
 Frame = -3

Query: 744 PXXGPXXKKKFFXXGXXPPXXGGEKK*XPPXXGXXKNPPPPPP 616
           P  GP            PP  G      PP  G    PPPPPP
Sbjct: 340 PPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382



 Score = 30.7 bits (66), Expect = 1.7
 Identities = 19/61 (31%), Positives = 19/61 (31%)
 Frame = -2

Query: 634 PPPPPPXXXXXXXFFFFXGXKXRKXPKXKKTPXSPXXXXXXXXXXXKXPXPXPPPXGGXK 455
           PPPPPP                   P  K  P  P           K P P PPP  G K
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGK 373

Query: 454 K 452
           K
Sbjct: 374 K 374


>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
          Length = 252

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/43 (34%), Positives = 16/43 (37%)
 Frame = -3

Query: 744 PXXGPXXKKKFFXXGXXPPXXGGEKK*XPPXXGXXKNPPPPPP 616
           P  GP  K         PP  G + K  PP  G    P PP P
Sbjct: 172 PKPGPKPKPPKPGPKPKPPKPGPKPKPKPPKPGPKPKPKPPKP 214


>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 18/68 (26%), Positives = 21/68 (30%)
 Frame = -2

Query: 673 KKIKXPXXXGXKKPPPPPPXXXXXXXFFFFXGXKXRKXPKXKKTPXSPXXXXXXXXXXXK 494
           +K+  P       PPPPPP            G K    P     P  P           +
Sbjct: 532 RKLPSPSPTAAAPPPPPPPPPPP-------SGNKPAFSPPPPPPPPPPPPLPQSNYASSQ 584

Query: 493 XPXPXPPP 470
            P P PPP
Sbjct: 585 PPPPPPPP 592


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,899,344
Number of Sequences: 37544
Number of extensions: 314225
Number of successful extensions: 6262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3388
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)