Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B07
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    34   0.12 
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    34   0.12 
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    34   0.12 
U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical pr...    29   6.2  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    29   6.2  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 702 GXXPPXXGGEKK*XPPXXGXXKNPPPPPP 616
           G  PP  GG     PP  G    PPPPPP
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPP 777



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPPP 616
           PP  G      PP  G  K  PPPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 702 GXXPPXXGGEKK*XPPXXGXXKNPPPPPP 616
           G  PP  GG     PP  G    PPPPPP
Sbjct: 749 GGLPPISGGPPPPPPPPGGCPPPPPPPPP 777



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPPP 616
           PP  G      PP  G  K  PPPPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -3

Query: 702 GXXPPXXGGEKK*XPPXXGXXKNPPPPPP 616
           G  PP  GG     PP  G    PPPPPP
Sbjct: 332 GGLPPISGGPPPPPPPPGGCPPPPPPPPP 360



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPPP 616
           PP  G      PP  G  K  PPPPP
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPP 371


>U88309-2|AAB42334.1|  211|Caenorhabditis elegans Hypothetical
           protein T23B3.5 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 681 GGEKK*XPPXXGXXKNPPPPPP 616
           GG+KK  PP       PPPP P
Sbjct: 24  GGKKKPPPPKSASKMGPPPPAP 45


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3

Query: 681 GGEKK*XPPXXGXXKNPPPPPP 616
           GG+KK  PP       PPPP P
Sbjct: 24  GGKKKPPPPKSASKMGPPPPAP 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,060,314
Number of Sequences: 27780
Number of extensions: 163283
Number of successful extensions: 2163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)