Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B06
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0904 + 25832026-25832643                                         29   6.4  
02_05_1245 + 35223504-35224778                                         29   6.4  
02_02_0280 - 8515894-8517309                                           29   6.4  

>06_03_0904 + 25832026-25832643
          Length = 205

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +3

Query: 99  MSQIAEEQKLEESDGLPPASSSSI-AAQEKPR 191
           M Q+A++  LE S GLP A++ +I AA+EK +
Sbjct: 156 MQQVADDYGLEVSVGLPQAAAHAIPAAKEKEK 187


>02_05_1245 + 35223504-35224778
          Length = 424

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -2

Query: 781 RSPQXNDRAQRVSERGSXRAPNTQTASPRALADSL--MQKNLPHLPLNLK-HKMNA 623
           RSP+    A + S   S  AP+T TA+  + A SL  ++ +LP LPL L  H++ A
Sbjct: 59  RSPRAT--ATQYSTTSSSSAPSTATATSSSTAASLQALRDSLPDLPLLLTFHELAA 112


>02_02_0280 - 8515894-8517309
          Length = 471

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 226 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDG 357
           + + +KT++ ++    G+G +  R     KN    T + SGG G
Sbjct: 379 AAMAQKTSDTIAQAGHGAGEAKNRAAESGKNSSATTTIGSGGGG 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,533,443
Number of Sequences: 37544
Number of extensions: 317702
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)