Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B04
         (978 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2; ...    41   0.055
UniRef50_A0R2X6 Cluster: Putative uncharacterized protein; n=2; ...    34   6.4  

>UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Magnetospirillum gryphiswaldense
          Length = 374

 Score = 40.7 bits (91), Expect = 0.055
 Identities = 32/91 (35%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
 Frame = +1

Query: 676 PPPPXXXXXXFFF--FXXXPPPXXGGGXXX--------KXXXFFXXXXXXFFFXPPPXXX 825
           PPPP      FFF  F   PPP  GGG                       FFF PPP   
Sbjct: 47  PPPPARRQKFFFFPHFFFPPPPRRGGGGVFFYKKKRGGPPPPPTTQKKKNFFFSPPPPPS 106

Query: 826 XXX--FXXXGGXXXXPXXXXXXXXPGGPPPP 912
                F   GG    P        PGG PPP
Sbjct: 107 FWGXFFGGGGGFVXXPPRGGAPPPPGGAPPP 137


>UniRef50_A0R2X6 Cluster: Putative uncharacterized protein; n=2;
           Mycobacterium|Rep: Putative uncharacterized protein -
           Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155)
          Length = 377

 Score = 33.9 bits (74), Expect = 6.4
 Identities = 20/64 (31%), Positives = 20/64 (31%)
 Frame = +1

Query: 727 PPPXXGGGXXXKXXXFFXXXXXXFFFXPPPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPP 906
           PPP  GG                  F PPP          GG    P        PGG P
Sbjct: 20  PPPPDGGYPPPPPPDGGYPPAQPGGFGPPPQGGYPPPPPPGGYPPPPQGGFPPPPPGGYP 79

Query: 907 PPPP 918
           PPPP
Sbjct: 80  PPPP 83


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 582,901,183
Number of Sequences: 1657284
Number of extensions: 9575636
Number of successful extensions: 33544
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28022
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 91448297248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)