Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B04
         (978 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    30   3.2  
07_03_1136 + 24218601-24218734,24218769-24219906                       25   6.6  
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27...    29   7.5  
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25...    29   7.5  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 807  PPPXXXXXXFXXXGGXPXXPXXXXPXXXXXGXXPPPP 917
            PPP          GG P  P    P     G  PPPP
Sbjct: 1066 PPPQRENTSVGIQGGIPPLPPPLPPTLGDYGVAPPPP 1102


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 24.6 bits (51), Expect(2) = 6.6
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 917 GGGGGGPPGXXXXXXXXGXXXXP 849
           GGGGGGPP         G    P
Sbjct: 111 GGGGGGPPSLPPGAGGGGGARPP 133



 Score = 22.6 bits (46), Expect(2) = 6.6
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = -2

Query: 746 PPXXGGGXXXKKKXXXFXXXGGGGXXXXXXXGG 648
           PP  GGG             GGGG       GG
Sbjct: 132 PPAPGGGGGGGAPRRVLGGGGGGGALARPPGGG 164


>12_01_0033 -
           272848-272943,274026-274169,274264-274375,274521-274702,
           274781-274912,275038-276330,279841-280545,280649-280695,
           280787-280865
          Length = 929

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 892 PGGPPPPPP 918
           PGGPPPPPP
Sbjct: 633 PGGPPPPPP 641


>11_01_0035 -
           256087-256185,256287-256430,256521-256632,256777-256958,
           257038-257169,257297-258589,259133-259837,260465-260549,
           260604-260650,260810-260900,261838-262101,262195-262309,
           262455-262570,262713-262847,262969-263036,263292-263411
          Length = 1235

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 892 PGGPPPPPP 918
           PGGPPPPPP
Sbjct: 938 PGGPPPPPP 946


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,205,569
Number of Sequences: 37544
Number of extensions: 457914
Number of successful extensions: 2992
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2488
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2846681820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)