Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B04
(978 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 0.94
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 0.94
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 0.94
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 6.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 6.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 6.7
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc... 29 6.7
AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase assoc... 29 6.7
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 0.94
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 808 PPPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PPP GG P GGPPPPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 808 PPPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PPP GG P GGPPPPPP
Sbjct: 713 PPPPPGLPPIT--GGPPPPPPPGGLPPITGGPPPPPP 747
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 847 GGXXXXPXXXXXXXXPGGPPPPPP 918
GG P GGPPPPPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPP 789
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 0.94
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 808 PPPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PPP GG P GGPPPPPP
Sbjct: 727 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 763
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 808 PPPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PPP GG P GGPPPPPP
Sbjct: 713 PPPPPGLPPIT--GGPPPPPPPGGLPPITGGPPPPPP 747
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 847 GGXXXXPXXXXXXXXPGGPPPPPP 918
GG P GGPPPPPP
Sbjct: 766 GGCPPPPPPPPPGGFKGGPPPPPP 789
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 0.94
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 808 PPPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PPP GG P GGPPPPPP
Sbjct: 310 PPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPP 346
Score = 28.7 bits (61), Expect = 6.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +1
Query: 808 PPPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PPP GG P GGPPPPPP
Sbjct: 296 PPPPPGLPPIT--GGPPPPPPPGGLPPITGGPPPPPP 330
Score = 28.3 bits (60), Expect = 8.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 847 GGXXXXPXXXXXXXXPGGPPPPPP 918
GG P GGPPPPPP
Sbjct: 349 GGCPPPPPPPPPGGFKGGPPPPPP 372
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +1
Query: 808 PPPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PPP G P GGPPPPPP
Sbjct: 520 PPPPPMPGMAPLSTGAPTPPPPPPVGMANGGPPPPPP 556
Score = 28.7 bits (61), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 892 PGGPPPPPP 918
PGGPPPPPP
Sbjct: 573 PGGPPPPPP 581
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 811 PPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PP F G P PGG PPPPP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 811 PPXXXXXXFXXXGGXXXXPXXXXXXXXPGGPPPPPP 918
PP F G P PGG PPPPP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362
>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase associated
protein homologprotein 1, isoform a protein.
Length = 1256
Score = 28.7 bits (61), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 892 PGGPPPPPP 918
PGGPPPPPP
Sbjct: 1009 PGGPPPPPP 1017
>AC006638-1|AAK85482.1| 495|Caenorhabditis elegans Cyclase
associated protein homologprotein 1, isoform b protein.
Length = 495
Score = 28.7 bits (61), Expect = 6.7
Identities = 9/9 (100%), Positives = 9/9 (100%)
Frame = +1
Query: 892 PGGPPPPPP 918
PGGPPPPPP
Sbjct: 248 PGGPPPPPP 256
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,661,859
Number of Sequences: 27780
Number of extensions: 255414
Number of successful extensions: 1214
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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