Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B02
         (904 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    29   0.050
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   2.5  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   5.7  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 29.1 bits (62), Expect = 0.050
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 260 ESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEG-GKKRVFNTKTLKDQ 436
           E E+ +  D  + +K ++  ED +KD   +E   +DE+     E   KK+    K  +D+
Sbjct: 218 EREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYTEDE 277

Query: 437 --NGQYPVW 457
             N   P+W
Sbjct: 278 ELNKTKPIW 286


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 305 SKKVLEDIEKDNEDVEMSSDDENVVVDSE 391
           SKK  ED E ++   +   DDEN+ VD +
Sbjct: 21  SKK--EDEEVEHRLSDRDDDDENITVDDD 47


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 371 NVVVDSEGGKKRVFNT 418
           N+ V S+G  K  FNT
Sbjct: 434 NIEVQSQGSSKNTFNT 449


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,270
Number of Sequences: 336
Number of extensions: 1513
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)