Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B02
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683...    36   0.044
07_01_0463 + 3502708-3503535                                           31   1.7  
07_03_1228 - 25009736-25010965                                         30   2.9  
03_05_0999 - 29583959-29584711,29584797-29585021,29585163-295853...    29   3.8  
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    28   8.8  
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561...    28   8.8  

>04_04_0664 -
           27066253-27067155,27067242-27067508,27067707-27068368,
           27068479-27069047,27070011-27070108
          Length = 832

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 284 DAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVD-SEGGKKRVFNTKTLKDQNGQ 445
           D+G  KK KK    +  D +D+E+  ++EN   D ++G ++ V N +   +++G+
Sbjct: 279 DSGKKKKKKKAARKMSSDEDDIEVEENEENTDNDGNDGNEEHVENEENEGNKSGE 333


>07_01_0463 + 3502708-3503535
          Length = 275

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 248 SEVMESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEM-SSDDENVVVDSEGGKKRVFNTKT 424
           +++++ E+V  LD+ D  KS    +D +KD E+ +    DDE+   D EG KK     + 
Sbjct: 54  AKIVDKEEVK-LDSDDGAKSAVKSKDSKKDKENKKSDKKDDEHDDEDEEGKKKEKEMKEK 112

Query: 425 LKDQN 439
            KD++
Sbjct: 113 KKDKS 117


>07_03_1228 - 25009736-25010965
          Length = 409

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
 Frame = +2

Query: 212 MLGVKXEXXPAGSEVMESEQVIFLDAGDLKKSKKVLE----DIEKDNEDVEMSSDDENVV 379
           MLGVK       S ++E+   +  ++   ++S K+ E    + + +N + EM  DDE   
Sbjct: 236 MLGVKMLGGVGNSHILETGATLNKESTTEERSTKIGESYIYETKVENTNEEMVDDDEGEE 295

Query: 380 VDSEGGKKRVFNTKTLKDQNGQYP 451
              EGG++     +  +++  + P
Sbjct: 296 EPEEGGEEEEEEEEEEEEEEEEEP 319


>03_05_0999 -
           29583959-29584711,29584797-29585021,29585163-29585360,
           29585472-29586056
          Length = 586

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 218 GVKXEXXPAGSEVMESEQ-VIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDE 370
           G + +   A    +E E  V   D G +KKSK+ LE  E++ ++V+  SD+E
Sbjct: 76  GGQDDAATASHHAVEGENGVADADGGGVKKSKEELE--EEEQQEVDWRSDEE 125


>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 269 QVIFLDAGDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFN 415
           QV+F +A +L K KK+    + DNE  ++ S+ E +     GG+K  FN
Sbjct: 60  QVLFQNAMELLK-KKLEFACDIDNEGQKLMSNMEMIQAVLRGGEKMKFN 107


>08_01_0649 +
           5607234-5608397,5609358-5609513,5609598-5609796,
           5612419-5613608,5614505-5614660,5614742-5615041
          Length = 1054

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +2

Query: 284 DAGDLKK---SKKVLEDI--EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQY 448
           D+GD +    SK  L+D   E D+ED   S D E  V D EGG  R      + D++  Y
Sbjct: 802 DSGDKRNRDGSKSDLDDHDGEYDHEDGSESGDKE--VDDLEGGDDRTVTYGEIADESSSY 859

Query: 449 PV 454
            +
Sbjct: 860 GI 861


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,972,750
Number of Sequences: 37544
Number of extensions: 169096
Number of successful extensions: 645
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)