Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B02
         (904 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    29   0.19 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   1.0  
AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein ...    25   3.1  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          25   4.2  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    24   7.3  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 114 RXKNKKXXKQRHAXXKEXRERQKXKGGPSREAGRER 7
           + + +K  ++R    KE RER++ +    REA RER
Sbjct: 490 KEQREKEERERQQREKEQREREQREKEREREAARER 525


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 26.6 bits (56), Expect = 1.0
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +2

Query: 158  RALKRARYAVKALA-RLKKMLGVKXEXXPAGSEVMESEQVIFLDAGD-LKKSKKVLEDIE 331
            R L   R  V A   R+KK+L    E     SE ++ ++ +  +    ++K K+  E +E
Sbjct: 857  RQLTNCRNEVVATEKRIKKVLTDTEEVDRKLSEALKQQKTLQKELESWIQKEKEAQEKLE 916

Query: 332  KDNEDVEMSSDDENVV 379
            +D + +E  +  EN++
Sbjct: 917  EDGKRMEKWATKENML 932


>AY263176-1|AAP78791.1|  705|Anopheles gambiae TmcB-like protein
           protein.
          Length = 705

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 488 YLFWRSYVCATKPGTV 441
           +LFWR++V  TKP  +
Sbjct: 573 HLFWRAFVYITKPAII 588


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 24.6 bits (51), Expect = 4.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 296  LKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKK 403
            L+K  K   D  +D+E+ E    +E    D EGG++
Sbjct: 953  LQKEVKKEVDAAEDDEEEEEEEQEEEEDEDEEGGEE 988


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 320 EDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPV 454
           ED E + E  +   D+E+   +   G     +  T++D +GQY V
Sbjct: 485 EDEEDEYEGDDTEEDEEDEDDELAAGPLGTSDVVTVEDGDGQYVV 529


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,126
Number of Sequences: 2352
Number of extensions: 6070
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97574436
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)