Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B02
(904 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC070232-1|AAH70232.1| 129|Homo sapiens chromosome 12 open read... 37 0.087
BC006002-1|AAH06002.1| 129|Homo sapiens chromosome 12 open read... 37 0.087
AK091568-1|BAC03699.1| 129|Homo sapiens protein ( Homo sapiens ... 37 0.087
BC107780-1|AAI07781.1| 129|Homo sapiens chromosome 12 open read... 37 0.12
M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein. 33 1.9
BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein. 33 1.9
BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein. 33 1.9
BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein. 33 1.9
AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens ... 33 1.9
AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein. 33 1.9
Z22780-1|CAA80457.1| 598|Homo sapiens cylicin protein. 31 4.3
BC126461-1|AAI26462.1| 651|Homo sapiens cylicin, basic protein ... 31 4.3
BC070355-1|AAH70355.1| 433|Homo sapiens CYLC1 protein protein. 31 4.3
BC038787-1|AAH38787.1| 563|Homo sapiens CYLC1 protein protein. 31 4.3
AL627233-1|CAI40037.1| 651|Homo sapiens cylicin, basic protein ... 31 4.3
AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens ... 31 5.7
>BC070232-1|AAH70232.1| 129|Homo sapiens chromosome 12 open reading
frame 31 protein.
Length = 129
Score = 37.1 bits (82), Expect = 0.087
Identities = 34/102 (33%), Positives = 50/102 (49%)
Frame = +2
Query: 158 RALKRARYAVKALARLKKMLGVKXEXXPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKD 337
RA KR + A K +RLK +L K + +V E V+ + K K E ++ +
Sbjct: 14 RAEKRKKNAPKEASRLKSIL--KLDGDVLMKDVQEIATVV------VPKPKHCQEKMQCE 65
Query: 338 NEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPVWLH 463
+D DD + D KR N KTL DQ+GQYP+W++
Sbjct: 66 VKD---EKDDMKMETDI----KR--NKKTLLDQHGQYPIWMN 98
>BC006002-1|AAH06002.1| 129|Homo sapiens chromosome 12 open reading
frame 31 protein.
Length = 129
Score = 37.1 bits (82), Expect = 0.087
Identities = 34/102 (33%), Positives = 50/102 (49%)
Frame = +2
Query: 158 RALKRARYAVKALARLKKMLGVKXEXXPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKD 337
RA KR + A K +RLK +L K + +V E V+ + K K E ++ +
Sbjct: 14 RAEKRKKNAPKEASRLKSIL--KLDGDVLMKDVQEIATVV------VPKPKHCQEKMQCE 65
Query: 338 NEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPVWLH 463
+D DD + D KR N KTL DQ+GQYP+W++
Sbjct: 66 VKD---EKDDMKMETDI----KR--NKKTLLDQHGQYPIWMN 98
>AK091568-1|BAC03699.1| 129|Homo sapiens protein ( Homo sapiens
cDNA FLJ34249 fis, clone FCBBF4000500. ).
Length = 129
Score = 37.1 bits (82), Expect = 0.087
Identities = 34/102 (33%), Positives = 50/102 (49%)
Frame = +2
Query: 158 RALKRARYAVKALARLKKMLGVKXEXXPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKD 337
RA KR + A K +RLK +L K + +V E V+ + K K E ++ +
Sbjct: 14 RAEKRKKNAPKEASRLKSIL--KLDGDVLMKDVQEIATVV------VPKPKHCQEKMQCE 65
Query: 338 NEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPVWLH 463
+D DD + D KR N KTL DQ+GQYP+W++
Sbjct: 66 VKD---EKDDMKMETDI----KR--NKKTLLDQHGQYPIWMN 98
>BC107780-1|AAI07781.1| 129|Homo sapiens chromosome 12 open reading
frame 31 protein.
Length = 129
Score = 36.7 bits (81), Expect = 0.12
Identities = 29/102 (28%), Positives = 51/102 (50%)
Frame = +2
Query: 158 RALKRARYAVKALARLKKMLGVKXEXXPAGSEVMESEQVIFLDAGDLKKSKKVLEDIEKD 337
RA KR + A K +RLK +L K + +V E V+ ++ K+ +++ +
Sbjct: 14 RAEKRKKNAPKEASRLKSIL--KLDGDVLMKDVQEIATVVVPKPKHCQE--KMQCEVKDE 69
Query: 338 NEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQYPVWLH 463
+D++M +D + N KTL DQ+GQYP+W++
Sbjct: 70 KDDMKMGTDIKR-------------NKKTLLDQHGQYPIWMN 98
>M60858-1|AAA59954.1| 707|Homo sapiens nucleolin protein.
Length = 707
Score = 32.7 bits (71), Expect = 1.9
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +2
Query: 290 GDLKKSKKVLEDIEKDNEDVEMSSDDEN------VVVDSEGGKK 403
GD KK +++E+D+ED EMS D+E+ VV+ + GKK
Sbjct: 12 GDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKK 55
>BC006516-1|AAH06516.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 32.7 bits (71), Expect = 1.9
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +2
Query: 290 GDLKKSKKVLEDIEKDNEDVEMSSDDEN------VVVDSEGGKK 403
GD KK +++E+D+ED EMS D+E+ VV+ + GKK
Sbjct: 12 GDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKK 55
>BC006494-1|AAH06494.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 32.7 bits (71), Expect = 1.9
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +2
Query: 290 GDLKKSKKVLEDIEKDNEDVEMSSDDEN------VVVDSEGGKK 403
GD KK +++E+D+ED EMS D+E+ VV+ + GKK
Sbjct: 12 GDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKK 55
>BC002343-1|AAH02343.3| 482|Homo sapiens NCL protein protein.
Length = 482
Score = 32.7 bits (71), Expect = 1.9
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +2
Query: 290 GDLKKSKKVLEDIEKDNEDVEMSSDDEN------VVVDSEGGKK 403
GD KK +++E+D+ED EMS D+E+ VV+ + GKK
Sbjct: 12 GDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKK 55
>AK091742-1|BAC03738.1| 687|Homo sapiens protein ( Homo sapiens
cDNA FLJ34423 fis, clone HHDPC2008123, highly similar to
NUCLEOLIN. ).
Length = 687
Score = 32.7 bits (71), Expect = 1.9
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +2
Query: 290 GDLKKSKKVLEDIEKDNEDVEMSSDDEN------VVVDSEGGKK 403
GD KK +++E+D+ED EMS D+E+ VV+ + GKK
Sbjct: 12 GDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKK 55
>AC017104-2|AAY24247.1| 710|Homo sapiens unknown protein.
Length = 710
Score = 32.7 bits (71), Expect = 1.9
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +2
Query: 290 GDLKKSKKVLEDIEKDNEDVEMSSDDEN------VVVDSEGGKK 403
GD KK +++E+D+ED EMS D+E+ VV+ + GKK
Sbjct: 12 GDPKKMAPPPKEVEEDSEDEEMSEDEEDDSSGEEVVIPQKKGKK 55
>Z22780-1|CAA80457.1| 598|Homo sapiens cylicin protein.
Length = 598
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 284 DAGDLKK-SKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQ 436
D+ D KK SKKV ++++KD++ ++ D E+ D+E G + T KD+
Sbjct: 249 DSKDAKKDSKKVKKNVKKDDKKKDVKKDTES--TDAESGDSKDERKDTKKDK 298
>BC126461-1|AAI26462.1| 651|Homo sapiens cylicin, basic protein of
sperm head cytoskeleton 1 protein.
Length = 651
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 284 DAGDLKK-SKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQ 436
D+ D KK SKKV ++++KD++ ++ D E+ D+E G + T KD+
Sbjct: 302 DSKDAKKDSKKVKKNVKKDDKKKDVKKDTES--TDAESGDSKDERKDTKKDK 351
>BC070355-1|AAH70355.1| 433|Homo sapiens CYLC1 protein protein.
Length = 433
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 284 DAGDLKK-SKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQ 436
D+ D KK SKKV ++++KD++ ++ D E+ D+E G + T KD+
Sbjct: 301 DSKDAKKDSKKVKKNVKKDDKKKDVKKDTES--TDAESGDSKDERKDTKKDK 350
>BC038787-1|AAH38787.1| 563|Homo sapiens CYLC1 protein protein.
Length = 563
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 284 DAGDLKK-SKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQ 436
D+ D KK SKKV ++++KD++ ++ D E+ D+E G + T KD+
Sbjct: 208 DSKDAKKDSKKVKKNVKKDDKKKDVKKDTES--TDAESGDSKDERKDTKKDK 257
>AL627233-1|CAI40037.1| 651|Homo sapiens cylicin, basic protein of
sperm head cytoskeleton protein.
Length = 651
Score = 31.5 bits (68), Expect = 4.3
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +2
Query: 284 DAGDLKK-SKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQ 436
D+ D KK SKKV ++++KD++ ++ D E+ D+E G + T KD+
Sbjct: 302 DSKDAKKDSKKVKKNVKKDDKKKDVKKDTES--TDAESGDSKDERKDTKKDK 351
>AK127608-1|BAC87055.1| 603|Homo sapiens protein ( Homo sapiens
cDNA FLJ45706 fis, clone FEBRA2028457, highly similar
to Nucleolin. ).
Length = 603
Score = 31.1 bits (67), Expect = 5.7
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +2
Query: 290 GDLKKSKKVLEDIEKDNEDVEMSSDDEN 373
GD KK +++E+D+ED EMS D+E+
Sbjct: 12 GDPKKMAPPPKEVEEDSEDEEMSEDEED 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,539,803
Number of Sequences: 237096
Number of extensions: 857240
Number of successful extensions: 2839
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2821
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11659288620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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