Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B01
         (870 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0067 - 20460206-20460703,20461255-20461530                       31   1.6  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    29   6.4  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   8.5  
02_05_0686 - 30900748-30902167,30903442-30904742                       28   8.5  

>03_05_0067 - 20460206-20460703,20461255-20461530
          Length = 257

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 761 PPPRXXXGXPXPPNXXKXFFFFXXXPPPPQXF 856
           PPP+   G P PP     +F     PPPPQ F
Sbjct: 6   PPPQWAMGPPPPPQ----YFQAGPPPPPPQYF 33


>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
            6627009-6627116,6627194-6627328,6627429-6627528,
            6627763-6627974,6628060-6628125,6628231-6628464,
            6628583-6628641,6628716-6628782,6628863-6629192,
            6629267-6629335,6629417-6629503,6629605-6629692,
            6630057-6630178,6630251-6630355,6630442-6630485,
            6630558-6630627,6630711-6630814,6630980-6631189,
            6632935-6633018,6633291-6634003,6634115-6634649,
            6634703-6634789,6634826-6634970,6635049-6635125,
            6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/50 (28%), Positives = 15/50 (30%)
 Frame = +3

Query: 258  PPRGGXPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPPNFXGXXXNPP 407
            PP G  PP    PP  P  P                  PP   G   +PP
Sbjct: 1150 PPPGSSPPPASPPPSTPSAPPTNSSGSAPSPPSPSQSAPPANTGGGGSPP 1199


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +3

Query: 243  GGPXXPPRGGXPPXXXXPPXNPXXPXGXXXXP 338
            GGP  PP    PP     P  P  P G    P
Sbjct: 1196 GGPPTPPGAPAPPMPPGVPGGPPPPPGGRGLP 1227


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/48 (29%), Positives = 15/48 (31%)
 Frame = +3

Query: 234 PXXGGPXXPPRGGXPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPP 377
           P    P  PP+G  PP     P  P  P G    P           PP
Sbjct: 332 PKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPP 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,140,431
Number of Sequences: 37544
Number of extensions: 151910
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)