Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B01
(870 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 35 0.087
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 35 0.087
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 35 0.087
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.4
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.4
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 5.7
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 5.7
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 5.7
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 5.7
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 34.7 bits (76), Expect = 0.087
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 PXXGGPXXPPR-GGXPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPP 377
P GGP PP GG PP PP P P G P PP
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 234 PXXGGPXXPPR-GGXPPXXXXPPXNPXXPXGXXXXPG 341
P GGP PP GG PP PP P P G G
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPP-PPPPGGLPPISG 756
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 234 PXXGGPXXPPRGGXPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPPNFXGXXXNPP 407
P GGP PP G PP PP P P G G P G PP
Sbjct: 708 PITGGPPPPP--GLPPITGGPPP-PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 34.7 bits (76), Expect = 0.087
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 PXXGGPXXPPR-GGXPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPP 377
P GGP PP GG PP PP P P G P PP
Sbjct: 737 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 785
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 234 PXXGGPXXPPR-GGXPPXXXXPPXNPXXPXGXXXXPG 341
P GGP PP GG PP PP P P G G
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPP-PPPPGGLPPISG 756
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 234 PXXGGPXXPPRGGXPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPPNFXGXXXNPP 407
P GGP PP G PP PP P P G G P G PP
Sbjct: 708 PITGGPPPPP--GLPPITGGPPP-PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 762
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 34.7 bits (76), Expect = 0.087
Identities = 18/49 (36%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Frame = +3
Query: 234 PXXGGPXXPPR-GGXPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPP 377
P GGP PP GG PP PP P P G P PP
Sbjct: 320 PITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPP 368
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 234 PXXGGPXXPPR-GGXPPXXXXPPXNPXXPXGXXXXPG 341
P GGP PP GG PP PP P P G G
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPP-PPPPGGLPPISG 339
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/58 (32%), Positives = 19/58 (32%)
Frame = +3
Query: 234 PXXGGPXXPPRGGXPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPPNFXGXXXNPP 407
P GGP PP G PP PP P P G G P G PP
Sbjct: 291 PITGGPPPPP--GLPPITGGPPP-PPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPP 345
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Frame = +3
Query: 234 PXXGGPXXPPRGG-XPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPPNFXGXXXNPP 407
P G P PP GG PP P P P G PP G PP
Sbjct: 275 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Frame = +3
Query: 234 PXXGGPXXPPRGG-XPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPPNFXGXXXNPP 407
P G P PP GG PP P P P G PP G PP
Sbjct: 296 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/59 (30%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Frame = +3
Query: 234 PXXGGPXXPPRGG-XPPXXXXPPXNPXXPXGXXXXPGKXXXXXXXKXPPNFXGXXXNPP 407
P G P PP GG PP P P P G PP G PP
Sbjct: 281 PPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 234 PXXGGPXXPPRGGXPPXXXXPPXNPXXPXG 323
P GGP P PP P NP P G
Sbjct: 149 PCPGGPPGPAGPAGPPGPPGPDGNPGSPAG 178
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 234 PXXGGPXXPPRGGXPPXXXXPPXNPXXPXG 323
P GGP P PP P NP P G
Sbjct: 149 PCPGGPPGPAGPAGPPGPPGPDGNPGSPAG 178
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 234 PXXGGPXXPPRGGXPPXXXXPPXNPXXPXG 323
P GGP P PP P NP P G
Sbjct: 149 PCPGGPPGPAGPAGPPGPPGPDGNPGSPAG 178
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 234 PXXGGPXXPPRGGXPPXXXXPPXNPXXPXG 323
P GGP P PP P NP P G
Sbjct: 149 PCPGGPPGPAGPAGPPGPPGPDGNPGSPAG 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,749,701
Number of Sequences: 27780
Number of extensions: 112556
Number of successful extensions: 413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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