Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A22
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    37   0.004
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 37.1 bits (82), Expect = 0.004
 Identities = 28/127 (22%), Positives = 32/127 (25%)
 Frame = +1

Query: 508 RXKKXPPPXGGXXXXGGXXPPPPXXXXPPKGRGGGXXQXPPXGGXTXLPTKXXEKPXKNX 687
           R  +  PP G         PPPP    PP+    G    PP G     P      P    
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPP----PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374

Query: 688 LXXXXPKPXTXKKXPXAXXXXXXXXXXXXXTXXXPXXTGGAXSPXPKXXPSXXPPKXXPX 867
                P P +  +                     P       S  P   P   PP   P 
Sbjct: 375 ----QPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPS 430

Query: 868 XPPFYXP 888
            PP   P
Sbjct: 431 LPPSAPP 437


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 523 PPPXGGXXXXGGXXPPPPXXXXPPKGRGGGXXQXP 627
           PPP        G  PPPP    P    GG     P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.145    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,703
Number of Sequences: 5004
Number of extensions: 15755
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)