Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A21
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423...    30   2.9  
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926...    29   3.8  
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617     29   6.7  
12_02_0445 - 19153580-19154269                                         28   8.9  
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879...    28   8.9  

>01_01_0571 -
           4233769-4234239,4234340-4234378,4234712-4234839,
           4235329-4235470,4235519-4235905,4236045-4236230,
           4236382-4236659,4236757-4236883,4237270-4237442,
           4237610-4237657,4237734-4237767,4237837-4237965,
           4238865-4238960,4239419-4239485,4240030-4240085,
           4240522-4240617,4241127-4242222,4243221-4243402
          Length = 1244

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 478 ESAEKQSQTIQYNVSRSTF*EDGQVIVSLEELLFSTNIFG 359
           E A K  + + Y+V R+    DGQ +V+LE  +FS N  G
Sbjct: 661 EDALKNGEVLAYHVYRTCLRMDGQTLVNLE--IFSNNFDG 698


>07_03_0025 +
           12587868-12588429,12591820-12592031,12592212-12592603,
           12592608-12592965
          Length = 507

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 335 TNTPYPPVPENIRRKQELFQRDNDLPVFLKG 427
           T+TP+PP+   +RR+ +   R+ +LP + KG
Sbjct: 363 TSTPHPPLLHPLRRRSDSAFRECELPRYGKG 393


>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
          Length = 772

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 227 ALQRVEVPVIQYNTNQFSTVTEEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQ 394
           ++QRV          + S ++    A+P  R        P+PP PE ++  Q L+Q
Sbjct: 437 SMQRVASHFADALAARLSLLSSPTSASPSPRAAAAAAPYPFPPSPETLKVYQILYQ 492


>12_02_0445 - 19153580-19154269
          Length = 229

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 290 EEACAAPGKRNLMPGTNTPYPPVPENIRRKQELFQRDNDLPVFLKGGPA 436
           +E    PG    MP  + P+PP P       +L +R+   P   + GPA
Sbjct: 12  DEELPRPGLPPTMPDDDPPFPPCPARSPAAPKLSRRERGAP---RDGPA 57


>09_06_0293 +
           22086359-22086496,22086604-22087213,22087407-22087938,
           22088617-22089151
          Length = 604

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 522 GIAWE*MVCTTPTNPRAQRSKVRRYSIT-SAGPPFRKTGKSLSLW 391
           GI+W  +VCTT T  R Q       +++  AGP    T ++   W
Sbjct: 114 GISWRAVVCTTTTTSRGQDDDAAGRALSLPAGPYVVLTKRARGSW 158


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,882,960
Number of Sequences: 37544
Number of extensions: 319652
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)