Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A19
(950 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.24
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.9
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 9.0
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.1 bits (67), Expect = 0.24
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -1
Query: 473 PPPXXXXPIXXRXPIXXCPPXPXXXNPPTPXP 378
PPP P PI PP P PP P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 734 PPPXXPPXXXPPPXPXXGXXXXPP 805
P P P PPP P G PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/23 (43%), Positives = 10/23 (43%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXGXPXXP 801
PPP PP G PP P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -1
Query: 488 PXESXPPPXXXXPIXXRXPIXXCPPXPXXXNPPTPXP 378
P S PPP P+ P PP P P P P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXGXPXXPXP 807
P P PP PP P P P P
Sbjct: 1722 PMPAGPPSAPPPPLPASSAPSVPNP 1746
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXGXPXXPXP 807
PP P G PP PP P P P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXGXPXXPXP 807
PP P G PP PP P P P
Sbjct: 1198 PPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Frame = +1
Query: 736 PPXXPPXGXPPXXPPX-GXPXXPXPXXXP 819
PP PP PP P G P P P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXP-PXGXPXXPXPXXXP 819
PPP P P P P G P P P P
Sbjct: 1063 PPPVPAPSSEIPSIPAPSGAPPVPAPSGIP 1092
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +1
Query: 736 PPXXPPXGXPPXXPPXGXPXXPXP 807
P P G PP P G P P P
Sbjct: 1074 PSIPAPSGAPPVPAPSGIPPVPKP 1097
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXGXPXXPXP 807
PP P PP P G P P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKP 1126
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXGXPXXPXP 807
PP P PP P G P P P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKP 1164
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXGXP 792
PPP PP PP PP P
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXGXPXXPXP 807
PP PP PP P P P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +1
Query: 733 PPPXXPPXGXPPXXPPXG 786
PPP P PP PP G
Sbjct: 14 PPPGFEPPSQPPPPPPPG 31
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.8 bits (54), Expect = 9.0
Identities = 10/28 (35%), Positives = 10/28 (35%)
Frame = +1
Query: 736 PPXXPPXGXPPXXPPXGXPXXPXPXXXP 819
PP PP P PP P P P
Sbjct: 1882 PPPPPPMALPKAGPPSAAPTSALPPAGP 1909
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,768
Number of Sequences: 5004
Number of extensions: 12675
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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