Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A17
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.002
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 36 0.006
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.042
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.30
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.52
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 5.6
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 6.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/50 (42%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Frame = -3
Query: 551 KXPPPPPPXXGXXXREGXPXPXPPXP--XGGPXXPXXP-----XXPPPPP 423
K PPPPPP P P PP GGP P P PPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 35.1 bits (77), Expect = 0.014
Identities = 20/56 (35%), Positives = 20/56 (35%)
Frame = -3
Query: 590 PPPPXXGGFFSXXKXPPPPPPXXGXXXREGXPXPXPPXPXGGPXXPXXPXXPPPPP 423
PPPP P P P G P P PP P P P PPPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIM--GGPPPPPPPPGVAGAGPPPP--PPPPP 783
Score = 30.7 bits (66), Expect = 0.30
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 620 VXGGXPXFXXPPPPXXGGFFSXXKXPPPPPP 528
+ GG P PPPP G + PPPPPP
Sbjct: 757 IMGGPP----PPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.69
Identities = 18/51 (35%), Positives = 19/51 (37%)
Frame = -2
Query: 615 GGXPPFPXXPPPXXGGVFFXXXXPPPPPPXXWXXXXGGXPKXXXPXPXGXP 463
GG PP P PPP G PPPPP G + P P P
Sbjct: 759 GGPPPPP--PPPGVAGA------GPPPPPPPPPAVSAGGSRYYAPAPQAEP 801
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -3
Query: 605 PXFXXPPPPXXGGFFSXXKXPPPPPP 528
P PPPP + PPPPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/59 (42%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Frame = +1
Query: 424 GGGGGXXGXXGXXGPPXGXGG----XGFGXPSLXXXPXXGGGGGGXXXXEKNPPXXGGG 588
GGG G G G GPP G GG GFG GG GGG E P GGG
Sbjct: 187 GGGFGGFGG-GSGGPPPGPGGFGGFGGFGGEG-HHHGGHGGFGGGPGGFEGGPGGFGGG 243
Score = 29.5 bits (63), Expect = 0.69
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +2
Query: 530 GGGGGGFXXXKKTPPXXGGGXXGXGG 607
GGG GGF PP GG G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGG 212
Score = 29.5 bits (63), Expect = 0.69
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +1
Query: 424 GGGGGXXGXXGXXGPPXGXGGXGFGXPSLXXXPXXGGGGGG 546
GG GG G G G G GG G G P GGG G
Sbjct: 228 GGPGGFEGGPGGFG--GGPGGFGGGLGGFGGGPGGFGGGPG 266
Score = 29.1 bits (62), Expect = 0.91
Identities = 22/58 (37%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +1
Query: 424 GGGGGXXGXXGXXGPPXGXGGX--GFGXPSLXXXPXXGGGGGGXXXXEKNPPXXGGGG 591
G GG G G G P G GG GFG GG GGG P GG G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGG-------GLGGFGGGPGGFGGGPGGHGGPG 272
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +2
Query: 476 GXGXXXLGXPPXXXFXXXGGGGGGFXXXKKTPPXXGGGXXGXGG 607
G G P GG GGG P GGG G GG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 33.5 bits (73), Expect = 0.042
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 605 PXFXXPPPPXXGGFFSXXKXPPPPPP 528
P PPPP GF + PPPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.9 bits (64), Expect = 0.52
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 545 PPPPPPXXGXXXREGXPXPXPP 480
PPPPPP G P P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 29.5 bits (63), Expect = 0.69
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 503 GXPXPXPPXPXGGPXXPXXPXXPPPP 426
G P P PP P P P P PPPP
Sbjct: 7 GNPPPPPPPPGFEP--PSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.30
Identities = 18/56 (32%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Frame = -3
Query: 584 PPXXGGFFSXXKXPPPPPPXXGXXXR-----EGXPXPXPPXPXGGPXXPXXPXXPP 432
PP G + PPPPPP +G P PP P P P PP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP--PP 378
Score = 29.9 bits (64), Expect = 0.52
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Frame = -3
Query: 545 PPPPPPXXGXXXREGXPXPX-----PPXPXGGPXXPXXPXXPPPPP 423
PP PP P P PP P G P P P P PP
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Score = 29.1 bits (62), Expect = 0.91
Identities = 18/62 (29%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Frame = -3
Query: 605 PXFXXPPPPXXGGFFSXXKXPPPPPPXXGXXXREGXPXPXPPX-PXGGPXXPXXPXXPPP 429
P P P G P P PP P PP P G P P P P
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPI 455
Query: 428 PP 423
P
Sbjct: 456 AP 457
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 14/57 (24%)
Frame = -3
Query: 551 KXPPPPP---------PXXGXXXREGXPXPXPPXPXGG-----PXXPXXPXXPPPPP 423
K PPPPP P G P PP P P P PPPPP
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/62 (29%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Frame = -3
Query: 605 PXFXXPPPPXXGGFFSXXKXPPPPPPXXGXXXREGXPXPXPPXPXG-GPXXPXXPXXPPP 429
P PP S PP PPP G P P P P P P
Sbjct: 234 PSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLP 293
Query: 428 PP 423
PP
Sbjct: 294 PP 295
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Frame = -3
Query: 545 PPPPPPXXGXXXREGXPXPXPPXPXGGPXXPXXPXX-PPPPP 423
PP PP G P PP P P P P P PP
Sbjct: 428 PPSLPPSAPPSLPMGAPAA-PPLPPSAPIAPPLPAGMPAAPP 468
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.52
Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Frame = -3
Query: 542 PPPPPXXGXXXREGXPXPXPPX-----PXGGPXXPXXPXXPPPPP 423
PP P + P P PP P P P P PPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = -3
Query: 545 PPPPPPXXGXXXREGXPXPXPPXPXGGPXXPXXPXXPPPP 426
P PPPP P PP P P P PPPP
Sbjct: 1705 PTPPPP----------PMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/40 (40%), Positives = 16/40 (40%)
Frame = -3
Query: 542 PPPPPXXGXXXREGXPXPXPPXPXGGPXXPXXPXXPPPPP 423
PPPPP P PP P G P P PPP P
Sbjct: 1707 PPPPPM-----SVPPPPSAPPMPAGPPSAP-----PPPLP 1736
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/56 (28%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Frame = -3
Query: 587 PPPXXGGFFSXXKXPPPPPPXXGXXXREGXPXPXPPXPXGGP--XXPXXPXXPPPP 426
PPP PP P + P PP P P P PPPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.7
Identities = 17/61 (27%), Positives = 18/61 (29%)
Frame = -3
Query: 605 PXFXXPPPPXXGGFFSXXKXPPPPPPXXGXXXREGXPXPXPPXPXGGPXXPXXPXXPPPP 426
P PP P S P P P + P P P G P P PP
Sbjct: 1097 PSVAAPPVPKP----SVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPV 1152
Query: 425 P 423
P
Sbjct: 1153 P 1153
Score = 27.1 bits (57), Expect = 3.7
Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 5/66 (7%)
Frame = -3
Query: 605 PXFXXPPPPXXGGFFSXXKX----PPPPPPXXGXXX-REGXPXPXPPXPXGGPXXPXXPX 441
P PP P G K PP P P + P P P G P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSV 1166
Query: 440 XPPPPP 423
PP P
Sbjct: 1167 AAPPVP 1172
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/56 (28%), Positives = 17/56 (30%)
Frame = -3
Query: 590 PPPPXXGGFFSXXKXPPPPPPXXGXXXREGXPXPXPPXPXGGPXXPXXPXXPPPPP 423
PP P G K PP + P P P G P P PP P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVP----KPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 22.6 bits (46), Expect(2) = 5.6
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = -2
Query: 546 PPPPPPXXWXXXXGG 502
PPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 21.8 bits (44), Expect(2) = 5.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 570 GVFFXXXXPPPPPP 529
GV PPPPPP
Sbjct: 939 GVMPAFPPPPPPPP 952
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Frame = -3
Query: 545 PPPPPPXXGXXXREGXPXPXPPXPXGG-------PXXPXXPXXPPPPP 423
PPPPPP P P P P P PP PP
Sbjct: 239 PPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPP 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,875,228
Number of Sequences: 5004
Number of extensions: 29173
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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