Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A16
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1659 + 38961637-38961639,38962361-38962433,38962531-389626...   230   1e-60
01_06_1660 + 38966999-38967001,38967685-38967757,38967841-389679...   229   2e-60
01_01_0182 - 1561779-1561873,1561977-1562050,1562140-1562207,156...    29   6.5  
02_05_0602 + 30283893-30284170,30286259-30286305,30286534-302875...    28   8.6  

>01_06_1659 +
           38961637-38961639,38962361-38962433,38962531-38962613,
           38962732-38962858,38962950-38963029,38963112-38963228,
           38963393-38963527,38963714-38963883,38963970-38964087
          Length = 301

 Score =  230 bits (563), Expect = 1e-60
 Identities = 122/245 (49%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
 Frame = +2

Query: 74  GFVKVVXHKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 253
           GFVK      YFKR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 254 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 433
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG                   
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 119

Query: 434 XXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 613
                  +Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF 
Sbjct: 120 NVEATGEDYYVEPADE-RRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178

Query: 614 GYDAESKKFNAEVHR----GSHLWFACC*IHEKS*TG**GFFQETXSKYIKLGVTADAIE 781
           G+  + K+ ++++HR    G H+      + E+        FQ   S+Y+K G+ AD +E
Sbjct: 179 GFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK----FQAHFSEYLKKGIDADGME 234

Query: 782 AIYXK 796
           ++Y K
Sbjct: 235 SLYKK 239


>01_06_1660 +
           38966999-38967001,38967685-38967757,38967841-38967923,
           38968042-38968168,38968260-38968339,38968428-38968544,
           38968711-38968845,38969046-38969215,38969300-38969417
          Length = 301

 Score =  229 bits (560), Expect = 2e-60
 Identities = 122/245 (49%), Positives = 153/245 (62%), Gaps = 4/245 (1%)
 Frame = +2

Query: 74  GFVKVVXHKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVT 253
           GFVK      Y KR+QVKFKRRR+GKTDY AR RL  QDKNKYNTPKYR +   +NKD+T
Sbjct: 3   GFVKTQKTNAYHKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 59

Query: 254 CQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXX 433
            Q+ Y+ I GD ++ AAYSHELPRYG++VGLTNYAAAY TG                   
Sbjct: 60  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEG 119

Query: 434 XXXXXXXEYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFP 613
                  +Y VEP D     FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF 
Sbjct: 120 NIEATGEDYYVEPADERR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 178

Query: 614 GYDAESKKFNAEVHR----GSHLWFACC*IHEKS*TG**GFFQETXSKYIKLGVTADAIE 781
           G+  + K+ ++++HR    G H+      + E+        FQ   S+Y+K G+ AD +E
Sbjct: 179 GFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEK----FQAHFSEYLKKGIDADGME 234

Query: 782 AIYXK 796
           A+Y K
Sbjct: 235 ALYKK 239


>01_01_0182 -
           1561779-1561873,1561977-1562050,1562140-1562207,
           1562279-1562371,1562521-1562604,1562697-1562752,
           1562843-1562950,1563051-1563225,1563237-1563422
          Length = 312

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -2

Query: 262 HLACYIFVGETHNQTIFRCVIFVLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNF 83
           HL  Y +  +  ++  FR       +NN  +TS ++++  T+P   Y +   +LF+ H  
Sbjct: 113 HLCSYTYDRDCKDEDSFRGRCVAGAINN--YTSQLLTYDATSPSTQYNLTQALLFLAHFV 170

Query: 82  NEAH 71
            + H
Sbjct: 171 GDIH 174


>02_05_0602 + 30283893-30284170,30286259-30286305,30286534-30287510,
            30287611-30287920,30288561-30290197
          Length = 1082

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
 Frame = +2

Query: 461  NVEPVDNG---PGAFRCYLDVGLAR------TTTGARVFGAMKGA----VDGGLNVPHSI 601
            NV PV  G   P    C L+ G             ARV  A  GA    VD  ++V  ++
Sbjct: 929  NVCPVHRGVCTPATTFCLLEAGAVEGLLACLENDDARVVDAALGALCTLVDDRVDVEKAV 988

Query: 602  KRFPGYDAESKKFNA-EVHRGSHLWFACC*IHEK 700
                G  A  +   A   HRG+ LW  C  + EK
Sbjct: 989  VALAGQGAARRVLAALRQHRGNSLWHRCFSVVEK 1022


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,657,566
Number of Sequences: 37544
Number of extensions: 424489
Number of successful extensions: 882
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)