Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A15
(899 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1201 - 11419851-11419913,11420090-11420311 33 0.31
02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434 30 2.2
07_03_0927 - 22642670-22643023 29 3.8
01_02_0036 + 10468636-10468938,10469014-10469109,10469247-104694... 29 3.8
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 8.8
04_03_0934 - 20912932-20912997,20913131-20913172,20913477-209138... 28 8.8
04_03_0380 - 15150814-15152304 28 8.8
04_03_0348 + 14735581-14737071 28 8.8
01_06_0289 + 28233327-28233815 28 8.8
01_01_1201 + 9678893-9679311,9679415-9679721 28 8.8
>07_01_1201 - 11419851-11419913,11420090-11420311
Length = 94
Score = 33.1 bits (72), Expect = 0.31
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +2
Query: 554 LRPPDEHHKNRRSSQRWRN--PTGL*RYQAFPPGKLPRALSCSDPAAYRIPXPP 709
L PP Q+WR+ PTG + +FP G LP A PA R P P
Sbjct: 13 LLPPPPPLPALPQGQQWRSTGPTGKLCFCSFPAGALPPAAGAGQPAPDRQPATP 66
>02_04_0618 - 24428987-24429331,24429946-24430387,24433358-24433434
Length = 287
Score = 30.3 bits (65), Expect = 2.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 186 FVACYCFSLXPFLSCNQQVXNNNCI 260
F CYCF+ SC+ ++ NNN +
Sbjct: 133 FAGCYCFARQAITSCSLRLRNNNIL 157
>07_03_0927 - 22642670-22643023
Length = 117
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 486 VKQKASKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQ 617
VKQ + GTV P RF +GS + IT +D V E Q
Sbjct: 46 VKQPETFHEGTVLIPGLGRFELGSTYVPDITGVDHSVPAAEHGQ 89
>01_02_0036 +
10468636-10468938,10469014-10469109,10469247-10469453,
10470762-10471097,10471469-10471582,10471634-10471639
Length = 353
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 735 KRHASRREKGGXGIR*AAGSEQESARGSXPGGNAW 631
K H RR +GG G E+E+ R S GG W
Sbjct: 9 KHHHHRRRRGGGGEDGGEEEEEETGRLSLRGGGFW 43
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -2
Query: 175 EKQXXHCRTKXXXGQTQAREXSXDVEXRNPAXKGEPRPRTXGGEXKGGPSREAGXGR 5
E+Q R G+ +A E E R P R GGE + P R+A R
Sbjct: 63 ERQAGGTRESAAAGEPRAGEGPGGWEGRRSGGGRAPARRRGGGETRAVPGRQAAVQR 119
>04_03_0934 -
20912932-20912997,20913131-20913172,20913477-20913845,
20913949-20914080
Length = 202
Score = 28.3 bits (60), Expect = 8.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 714 EKGGXGIR*AAGSEQESARGSXPGGNA 634
+ GG G SE+ S RG+ PGGNA
Sbjct: 88 DDGGGGDMPTLPSERRSPRGALPGGNA 114
>04_03_0380 - 15150814-15152304
Length = 496
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 732 RHASRREKGGXGIR*AAGSEQESARGSXPGGNA 634
R A EKG R AAG ++ +AR + PGG A
Sbjct: 440 REAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472
>04_03_0348 + 14735581-14737071
Length = 496
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 732 RHASRREKGGXGIR*AAGSEQESARGSXPGGNA 634
R A EKG R AAG ++ +AR + PGG A
Sbjct: 440 REAMEGEKGAEMRRRAAGWKEAAARAARPGGPA 472
>01_06_0289 + 28233327-28233815
Length = 162
Score = 28.3 bits (60), Expect = 8.8
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 738 RKRHASRREKGGXGIR*AAGSEQESARGSXPGGNA 634
R+RHA RR KGG G + + RG GG A
Sbjct: 123 RRRHARRRSKGGGG---SGDGDCGGLRGGARGGGA 154
>01_01_1201 + 9678893-9679311,9679415-9679721
Length = 241
Score = 28.3 bits (60), Expect = 8.8
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 792 SLERTTYTRTEIPTA*AMRKRHASRREKGGXGIR*AAGSEQESAR 658
S++++ R E A + HA+RR++ G G G+ QESAR
Sbjct: 3 SMQKSREERAEAAAHRAADELHAARRDEPGGGGGGMLGTVQESAR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,639,606
Number of Sequences: 37544
Number of extensions: 432411
Number of successful extensions: 1226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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