Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A13
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603...    54   1e-07
02_05_1034 - 33649634-33649651,33649699-33649811,33649938-336500...    53   4e-07
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350...    51   1e-06
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408...    43   4e-04

>01_07_0081 -
           40959279-40959375,40959463-40959589,40960138-40960339,
           40962414-40963361
          Length = 457

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 26/85 (30%), Positives = 47/85 (55%)
 Frame = +3

Query: 333 PXKLIVCHYKKGTEICNYIYSNTILXVKLNRSRLIVCLEESLHIHNIRDMKILHTIRDTP 512
           P K+++    +   I    + + +  V+L R R+IV LE  + ++N  D+K++H I +T 
Sbjct: 175 PNKVMIWDDHQSRCIGELSFRSPVRGVRLRRDRIIVVLENKIFVYNFADLKLVHQI-ETA 233

Query: 513 PXPRGLCALSPCVXHCYVAXPGSMR 587
           P P+GLCA+S       +  PG+ +
Sbjct: 234 PNPKGLCAVSQQPGSIVLVCPGAQK 258


>02_05_1034 -
           33649634-33649651,33649699-33649811,33649938-33650029,
           33650212-33650321,33650444-33650517,33650877-33650950,
           33651091-33651158
          Length = 182

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 24/64 (37%), Positives = 40/64 (62%)
 Frame = +3

Query: 390 YSNTILXVKLNRSRLIVCLEESLHIHNIRDMKILHTIRDTPPXPRGLCALSPCVXHCYVA 569
           +  ++L V+L+R+RL+V L++   I+++    IL  I +T P  +GLCA +P    CY+A
Sbjct: 96  FKTSVLAVRLSRTRLVVVLQDRTFIYDVNSTTILEEI-ETVPNTKGLCAFAPNSEACYLA 154

Query: 570 XPGS 581
            P S
Sbjct: 155 IPAS 158


>01_01_0476 +
           3505799-3506479,3506639-3506897,3508427-3508550,
           3508922-3509030
          Length = 390

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 24/82 (29%), Positives = 45/82 (54%)
 Frame = +3

Query: 333 PXKLIVCHYKKGTEICNYIYSNTILXVKLNRSRLIVCLEESLHIHNIRDMKILHTIRDTP 512
           P K+++    +   I  + + + +  VKL +  +++ LE  ++++N  D+K+LH I +T 
Sbjct: 86  PNKVMIWDDHRSHCIGEFAFRSDVRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQI-ETQ 144

Query: 513 PXPRGLCALSPCVXHCYVAXPG 578
             P+GLC LS       +A PG
Sbjct: 145 SNPKGLCCLSHHSNTSVLACPG 166


>05_01_0490 +
           4083768-4083775,4083845-4084336,4084441-4084522,
           4086671-4087357,4087555-4087813,4088435-4088558,
           4089474-4089564
          Length = 580

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 20/71 (28%), Positives = 40/71 (56%)
 Frame = +3

Query: 375 ICNYIYSNTILXVKLNRSRLIVCLEESLHIHNIRDMKILHTIRDTPPXPRGLCALSPCVX 554
           I  Y +++ I  V+L++   +V LE++++++  +D+++ +  R T   P GLC LS    
Sbjct: 296 IHKYNFTSEIRAVRLSKDYFVVVLEKTINVYRFKDLRLFYQAR-TVSNPNGLCCLSHHAN 354

Query: 555 HCYVAXPGSMR 587
               A PG+ +
Sbjct: 355 ASVFACPGTSK 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,993,396
Number of Sequences: 37544
Number of extensions: 215607
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)