Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A13
         (934 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autopha...    76   4e-14
AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autopha...    76   4e-14
Z93391-4|CAC42353.1|  397|Caenorhabditis elegans Hypothetical pr...    32   0.67 
AF188750-1|AAF00547.1|  293|Caenorhabditis elegans putative tyro...    32   0.67 

>AF016448-16|AAM45377.1|  394|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform b protein.
          Length = 394

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 32/83 (38%), Positives = 54/83 (65%)
 Frame = +3

Query: 333 PXKLIVCHYKKGTEICNYIYSNTILXVKLNRSRLIVCLEESLHIHNIRDMKILHTIRDTP 512
           P  L V H+     IC++ ++ ++L V+LNR R++VCLE+ ++I+N++DMK++H I DTP
Sbjct: 82  PRVLHVYHFTSRNIICDHRFNKSVLTVRLNRDRIVVCLEDCIYIYNLKDMKMMHNIMDTP 141

Query: 513 PXPRGLCALSPCVXHCYVAXPGS 581
               G+  L+    +  +A PGS
Sbjct: 142 TNKLGVLDLTSNPGNALIAYPGS 164


>AF016448-15|AAB65961.1|  412|Caenorhabditis elegans Atg (autophagy)
           related protein18, isoform a protein.
          Length = 412

 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 32/83 (38%), Positives = 54/83 (65%)
 Frame = +3

Query: 333 PXKLIVCHYKKGTEICNYIYSNTILXVKLNRSRLIVCLEESLHIHNIRDMKILHTIRDTP 512
           P  L V H+     IC++ ++ ++L V+LNR R++VCLE+ ++I+N++DMK++H I DTP
Sbjct: 82  PRVLHVYHFTSRNIICDHRFNKSVLTVRLNRDRIVVCLEDCIYIYNLKDMKMMHNIMDTP 141

Query: 513 PXPRGLCALSPCVXHCYVAXPGS 581
               G+  L+    +  +A PGS
Sbjct: 142 TNKLGVLDLTSNPGNALIAYPGS 164


>Z93391-4|CAC42353.1|  397|Caenorhabditis elegans Hypothetical
           protein W04G5.10 protein.
          Length = 397

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 366 GTEICNYIYSNTILXVKLNRSRLIVCLEESLHIHNIRDMKILH 494
           G+     +Y   +   + N + +IV ++E  +IHNIR  KILH
Sbjct: 107 GSGFFGTVYRAELRRERRNSNFMIVAVKEPSNIHNIRQKKILH 149


>AF188750-1|AAF00547.1|  293|Caenorhabditis elegans putative
           tyrosine kinase receptorW04G5.6B protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 366 GTEICNYIYSNTILXVKLNRSRLIVCLEESLHIHNIRDMKILH 494
           G+     +Y   +   + N + +IV ++E  +IHNIR  KILH
Sbjct: 47  GSGFFGTVYRAELRRERRNSNFMIVAVKEPSNIHNIRQKKILH 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,751,815
Number of Sequences: 27780
Number of extensions: 160901
Number of successful extensions: 296
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)