Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A13
         (934 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   9.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 238 RRNICESQRTGD 273
           RRN CESQ  GD
Sbjct: 406 RRNSCESQMMGD 417


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 35  GNSXKILPASPSQLQXRSGXXXXDDSRDXECXXNMRVSF 151
           GN+ +I+   P  LQ  SG       +D +      +SF
Sbjct: 343 GNNIEIIVKDPETLQFPSGMKIISSKKDRQELWIFTISF 381


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 262  RTGDLSRRPSLQXARWWL 315
            R  ++ RRP L+  + WL
Sbjct: 987  RLAEIKRRPDLEYGKVWL 1004


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,713
Number of Sequences: 438
Number of extensions: 2076
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)