Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A11
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    36   0.058
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066     33   0.24 
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    30   2.2  
08_01_0600 - 5262573-5262773,5262850-5262952,5263050-5263180,526...    29   5.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   6.7  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
 Frame = -3

Query: 851 GPPPPXXXXFFFXXGGGXPXXXXXXPPXXXXXXXXPPXXXXXF--XXXPPPXXXXNTPPP 678
           GPPPP    F F  G G P      PP        PP           PPP     +PPP
Sbjct: 61  GPPPPHQPQFNF--GPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPP 118

Query: 677 XXXXXXPXP 651
                 P P
Sbjct: 119 SAPPPPPPP 127



 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/68 (27%), Positives = 20/68 (29%), Gaps = 1/68 (1%)
 Frame = -3

Query: 851 GPPPPXXXXF-FFXXGGGXPXXXXXXPPXXXXXXXXPPXXXXXFXXXPPPXXXXNTPPPX 675
           GPPPP    +       G P      PP        PP     F   P P      PPP 
Sbjct: 29  GPPPPQQPAYGHMPPPQGAPPPFLAPPP--PPPPGPPPPHQPQFNFGPGPPQQQQPPPPP 86

Query: 674 XXXXXPXP 651
                P P
Sbjct: 87  QMYYQPPP 94


>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
          Length = 646

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 20/75 (26%), Positives = 21/75 (28%)
 Frame = -3

Query: 902 PPGXXXGGXXXXXXXXGGPPPPXXXXFFFXXGGGXPXXXXXXPPXXXXXXXXPPXXXXXF 723
           PP     G        G PPPP    +     G  P      PP        PP      
Sbjct: 405 PPADPAAGGYTSQPYMGAPPPPPPGSYAPVPWGQPPPYASYPPPPPGSSMYNPPPPAPG- 463

Query: 722 XXXPPPXXXXNTPPP 678
              PPP      PPP
Sbjct: 464 QATPPPYGVQYAPPP 478


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/66 (28%), Positives = 19/66 (28%)
 Frame = -3

Query: 848  PPPPXXXXFFFXXGGGXPXXXXXXPPXXXXXXXXPPXXXXXFXXXPPPXXXXNTPPPXXX 669
            PPPP          GG P      PP        PP         PPP      PPP   
Sbjct: 1065 PPPPQRENTSVGIQGGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPP------PPPGGI 1118

Query: 668  XXXPXP 651
               P P
Sbjct: 1119 TGVPPP 1124


>08_01_0600 -
           5262573-5262773,5262850-5262952,5263050-5263180,
           5263263-5263312,5265266-5265725,5266349-5266708
          Length = 434

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/59 (28%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
 Frame = -3

Query: 848 PPPPXXXXFFFXXGGGXPXXXXXXP--PXXXXXXXXPPXXXXXFXXXPPPXXXXNTPPP 678
           PPPP         GG  P      P  P        PP         PPP      PPP
Sbjct: 3   PPPPPPQAGVAGGGGAPPQWGAIPPPVPHQQQQYAPPPPQMWGQAPPPPPQMWGQAPPP 61


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = -1

Query: 775 PPXXXXXXXXPPXXKXXXXXXPPXXGXXTXPPPXGXXXXPP 653
           PP        PP         PP  G    PPP G    PP
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPP 367


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.153    0.510 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,136,309
Number of Sequences: 37544
Number of extensions: 281867
Number of successful extensions: 328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)