Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A09
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 30 2.2
09_02_0349 - 7632140-7632234,7632348-7632449,7632864-7632962,763... 30 2.9
01_05_0679 + 24230740-24230929,24231330-24231461,24231710-242319... 29 5.0
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 29 6.6
08_02_0450 - 17266977-17267165,17268017-17268053,17268139-172695... 29 6.6
04_01_0365 - 4796780-4796971,4797246-4797327,4797417-4797527,479... 29 6.6
12_02_0193 + 15242068-15242265,15242356-15244589,15244675-152449... 28 8.7
12_01_0927 + 9196230-9196427,9196499-9197190,9197317-9198351,919... 28 8.7
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 30.3 bits (65), Expect = 2.2
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -2
Query: 892 APDPVLYAQQVAPXQXXHGQXXMRTAQXTPPHXVPKNGSRGHIAAARYPDGATISIRTNA 713
AP PV A +P + H + Q +PP P++ + PDG T ++N
Sbjct: 522 APQPV-QASPTSPAKQ-HAPPAPPSVQTSPP--TPQSAL---VEQVHIPDGTTSEPKSNT 574
Query: 712 LNFWXLLTRICSTYTP 665
L ++ ++ STY P
Sbjct: 575 LELSRIIPKLISTYDP 590
>09_02_0349 -
7632140-7632234,7632348-7632449,7632864-7632962,
7633517-7633622,7633897-7633978,7634068-7634178,
7634259-7634510,7634596-7635688,7636157-7636829,
7636920-7637117
Length = 936
Score = 29.9 bits (64), Expect = 2.9
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -2
Query: 892 APDPVLYAQQVAPXQXXHGQXXMRTAQXTPPHXVPKNGSRGHIAAARYPDGATISIRTNA 713
AP PV A +P + H + Q +PP P++ + PDG T ++N
Sbjct: 453 APQPV-QASPTSPAKQ-HAPPAPPSVQTSPP--TPQSAL---VEQVHIPDGITSEPKSNT 505
Query: 712 LNFWXLLTRICSTYTP 665
L ++ ++ STY P
Sbjct: 506 LELSRIIPKLISTYDP 521
>01_05_0679 +
24230740-24230929,24231330-24231461,24231710-24231977,
24232170-24232388,24233538-24233673,24233899-24234147,
24234783-24235100
Length = 503
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +3
Query: 288 LELSGDDCHFTLAKSLFKNTKLIIAMHCDAAVPLNITYDWTPEMCSPEYLHYFEQRIVTC 467
LEL F LA+ + + ++ + LN ++W ++ S L Y R+V C
Sbjct: 159 LELLSGSLEFPLAEQVKRALQIPLPRTLKRVEALNFIFEWWKDVSSDINLDYTRDRVVEC 218
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -2
Query: 892 APDPVLYAQQVAPXQXXHGQXXMRTAQXTPPHXVPKNGSRGHIAAARYPDGATISIRTNA 713
AP PV A +P + H + Q +PP P++ + PDG T ++N
Sbjct: 517 APQPV-QASPTSPAKQ-HAPPAPPSVQTSPP--TPQSAL---VEQVHIPDGTTSEPKSNT 569
Query: 712 LNFWXLLTRICSTYTP 665
L ++ ++ STY P
Sbjct: 570 LEPRRIIPKLISTYDP 585
>08_02_0450 -
17266977-17267165,17268017-17268053,17268139-17269514,
17285369-17286055,17286146-17286343
Length = 828
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/76 (27%), Positives = 34/76 (44%)
Frame = -2
Query: 892 APDPVLYAQQVAPXQXXHGQXXMRTAQXTPPHXVPKNGSRGHIAAARYPDGATISIRTNA 713
AP PV A +P + H + Q +PP P++ + PDG T ++N
Sbjct: 563 APQPV-QASPTSPAKK-HAPPAPPSVQTSPP--TPQSAL---VEQVHIPDGTTSEPKSNT 615
Query: 712 LNFWXLLTRICSTYTP 665
L ++ ++ STY P
Sbjct: 616 LEPRRIIPKLISTYDP 631
>04_01_0365 -
4796780-4796971,4797246-4797327,4797417-4797527,
4797608-4797859,4797945-4800115
Length = 935
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -2
Query: 889 PDPVLYAQQVAPXQXXHGQXXMRTAQXTPPHXVPKNGSRGHIAAARYPDGATISIRTNAL 710
P PV A +P + H + Q +PP P++ + PDG T ++N L
Sbjct: 523 PQPV-QASPTSPAKQ-HAPPAPPSVQTSPP--TPQSAL---VEQVHIPDGTTSEPKSNTL 575
Query: 709 NFWXLLTRICSTYTP 665
++ ++ STY P
Sbjct: 576 ELSRIIPKLISTYDP 590
>12_02_0193 +
15242068-15242265,15242356-15244589,15244675-15244926,
15245007-15245117,15245207-15245288,15245563-15245754
Length = 1022
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/75 (26%), Positives = 34/75 (45%)
Frame = -2
Query: 889 PDPVLYAQQVAPXQXXHGQXXMRTAQXTPPHXVPKNGSRGHIAAARYPDGATISIRTNAL 710
P PV A +P + H + Q +PP +P++ + PDG T ++N L
Sbjct: 610 PQPV-QASPTSPTKQ-HAPPTPPSVQTSPP--IPQSAL---VEQVHIPDGTTSEPKSNTL 662
Query: 709 NFWXLLTRICSTYTP 665
++ ++ STY P
Sbjct: 663 EPRRIIPKLISTYDP 677
>12_01_0927 +
9196230-9196427,9196499-9197190,9197317-9198351,
9198437-9198688,9198769-9198879,9198969-9199050,
9199325-9199516
Length = 853
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/76 (26%), Positives = 32/76 (42%)
Frame = -2
Query: 892 APDPVLYAQQVAPXQXXHGQXXMRTAQXTPPHXVPKNGSRGHIAAARYPDGATISIRTNA 713
AP PV + Q H + Q +PP P++ + PDG T ++N
Sbjct: 440 APQPVQASPTSLAKQ--HAPPAPPSVQTSPP--TPQSAL---VEQVHIPDGTTSEPKSNT 492
Query: 712 LNFWXLLTRICSTYTP 665
L ++ ++ STY P
Sbjct: 493 LELSRIIPKLISTYDP 508
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,232,751
Number of Sequences: 37544
Number of extensions: 443089
Number of successful extensions: 989
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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