Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A09
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    34   0.16 
U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
 Frame = +3

Query: 597 VDKIETDITSQSKLPPLLIVEKEGVYVLQMRV-------RSXQKFKAFVRIEMVAPSGYL 755
           VD+++ D        P   + ++G+Y + ++V                + ++  AP GYL
Sbjct: 150 VDRVKRD-AGLGSFHPAQSIPRDGIYYMIIKVVGKSFPSSPNSNTNVTISVQWKAPYGYL 208

Query: 756 AAAIWPLLPFFGTXC 800
           +A  WPLL F+   C
Sbjct: 209 SAIDWPLLRFYKIMC 223



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +2

Query: 854 WRDLLRIQYWIGG 892
           +RD+LRIQYWIGG
Sbjct: 241 YRDILRIQYWIGG 253


>U40954-2|ABB88226.1|  152|Caenorhabditis elegans Hypothetical
           protein ZK813.4b protein.
          Length = 152

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -2

Query: 775 RGHIAAARYPDGATISIRTNALNFWXLLTRICSTYTPS-FSTINRGGSLDCDVMSVSILS 599
           R H+ A    DG    IR   + +   +      Y P  F    RGGS   ++++V   S
Sbjct: 21  RWHVDAFILDDGTNSEIRRGGIVY---VADEAIVYRPRRFDCSKRGGSYTAEILNVQKTS 77

Query: 598 TG*SFPPSN 572
            G ++ P N
Sbjct: 78  KGKTYTPDN 86


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,296,940
Number of Sequences: 27780
Number of extensions: 403232
Number of successful extensions: 943
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)