Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A06
         (932 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   0.043
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.044
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.058
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.058
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    26   0.061
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.23 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.71 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   2.2  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    27   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.6  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   6.6  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect(2) = 0.043
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 254 PPPPPPXPP 280
           PPPPPP PP
Sbjct: 945 PPPPPPPPP 953



 Score = 25.8 bits (54), Expect(2) = 0.043
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 248 PXPPPPPPXP 277
           P PPPPPP P
Sbjct: 905 PTPPPPPPLP 914



 Score = 24.2 bits (50), Expect(2) = 0.97
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 248 PXPPPPPPXPP 280
           P  PPPPP PP
Sbjct: 942 PAFPPPPPPPP 952



 Score = 23.0 bits (47), Expect(2) = 0.97
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 260 PPPPXPPXP 286
           PPPP PP P
Sbjct: 945 PPPPPPPPP 953



 Score = 22.6 bits (46), Expect(2) = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 257 PPPPPXPPXP 286
           P PPP PP P
Sbjct: 905 PTPPPPPPLP 914



 Score = 21.8 bits (44), Expect(2) = 5.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 266 PPXPPXPXPPXP 301
           P  PP P PP P
Sbjct: 942 PAFPPPPPPPPP 953


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.5 bits (73), Expect = 0.044
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
 Frame = +2

Query: 242 GXPXPPPPPP---XPPXPXPPXPXG 307
           G P PPPPPP    P  P PP P G
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
 Frame = +2

Query: 248 PXPPPPPPXPPXPXPP-XPXGAPXKXFXK 331
           P  PPPPP PP   PP  P   P   + K
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVK 34


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.058
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = -3

Query: 318 FXGAPXGXGGXGXGGXGGGGGGXG 247
           F G P G GG G GG GGG GG G
Sbjct: 240 FGGGPGGFGG-GLGGFGGGPGGFG 262



 Score = 32.3 bits (70), Expect = 0.10
 Identities = 15/24 (62%), Positives = 15/24 (62%)
 Frame = -3

Query: 318 FXGAPXGXGGXGXGGXGGGGGGXG 247
           F G P G GG G GG GGG GG G
Sbjct: 233 FEGGPGGFGG-GPGGFGGGLGGFG 255



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = -3

Query: 318 FXGAPXGXGGXGXGGXGGGGGGXGXP 241
           F G   G GG G GG GGG GG G P
Sbjct: 247 FGGGLGGFGG-GPGGFGGGPGGHGGP 271



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 300 GXGGXGXGGXGGGGGG 253
           G  G G GG GGG GG
Sbjct: 184 GHNGGGFGGFGGGSGG 199


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.058
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
 Frame = +2

Query: 242 GXPXPPPPPP-----XPPXPXPPXP 301
           G P PPPPPP      PP P PP P
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +3

Query: 591 PXPPXKKSPXXXGPPPXXXPXXXXXFXPXGXXXXPPXXXAG 713
           P P    +P   GPPP   P       P      PP   AG
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 570 PXFGGXPPXPPXKKSPXXXGPPPXXXP 650
           P  GG PP PP        GPPP   P
Sbjct: 756 PIMGGPPP-PPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 248 PXPPPPPPXPPXPXPPXPXG 307
           P PPP P     P PP P G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = +2

Query: 254 PPPPPPXPPXPXP-PXPXGAP 313
           PPPPPP    P P P P   P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVP 752


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect(2) = 0.061
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 254 PPPPPPXPP 280
           PPPPPP PP
Sbjct: 306 PPPPPPPPP 314



 Score = 25.4 bits (53), Expect(2) = 0.061
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 242 GXPXPPPPPP 271
           G P PPPPPP
Sbjct: 304 GLPPPPPPPP 313


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +2

Query: 248  PXPPPPPPX--PPXPXPPXPXGAP 313
            P PPPPP    PP   PP P G P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = +2

Query: 242 GXPXPPPPPPXPPXPXPPXPXGAP 313
           G P  PP PP  P P PP P  AP
Sbjct: 462 GMPAAPPLPPAAPAP-PPAPAPAP 484



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 242 GXPXPPPPPPXPPXPXPPXPXGAP 313
           G P  PP PP  P   PP P G P
Sbjct: 442 GAPAAPPLPPSAPI-APPLPAGMP 464



 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 254 PPPPPPXPPXPXPPXPXGAP 313
           P  PP  PP   P  P GAP
Sbjct: 425 PSAPPSLPPSAPPSLPMGAP 444



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 248 PXPPPPPPXPPXPXPPXPXGAP 313
           P  P PP  PP   P  P  AP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAP 436



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 12/34 (35%)
 Frame = +2

Query: 248 PXPPPPP--------PXPPX----PXPPXPXGAP 313
           P PPPPP        P PP     P PP P  AP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 22.2 bits (45), Expect(2) = 8.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 242 GXPXPPPPPP 271
           G   PPPPPP
Sbjct: 357 GRSAPPPPPP 366



 Score = 21.8 bits (44), Expect(2) = 8.3
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +2

Query: 248 PXPPPPPPXPPXPXPPXP 301
           P PPPP   P     P P
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = +2

Query: 242  GXPXPPPPPPXPPXPXP--PXPXGAP 313
            G P  PPP P P    P  P P GAP
Sbjct: 1058 GAPSAPPPVPAPSSEIPSIPAPSGAP 1083


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/19 (57%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
 Frame = +2

Query: 248 PXPPPPPPXP-PXPXPPXP 301
           P PPPPPP P P    P P
Sbjct: 3   PAPPPPPPAPAPAAAAPAP 21



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 257 PPPPPXPPXPXPPXPXGAP 313
           P PPP PP P P     AP
Sbjct: 3   PAPPPPPPAPAPAAAAPAP 21



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 248 PXPPPPPPXPPXPXPPXP 301
           P PPPP P P    P  P
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 242 GXPXPPPPPPXPPXPXPPXP 301
           G P   PPP   P P PP P
Sbjct: 800 GNPFKAPPPAPLPPPAPPLP 819


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 254 PPPPPPXPP 280
           PPPPPP PP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 248 PXPPPPPPXPPXPXP 292
           P P PPPP PP   P
Sbjct: 234 PLPAPPPPPPPTLPP 248



 Score = 23.4 bits (48), Expect(2) = 7.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 248 PXPPPPPP 271
           P PPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 20.6 bits (41), Expect(2) = 7.6
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +2

Query: 254 PPPPPPXPPXPXPPXPXGAP 313
           P    P P  P PP P   P
Sbjct: 229 PKQADPLPAPPPPPPPTLPP 248


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = -3

Query: 312 GAPXGXGGXGX--GGXGGGGGGXG 247
           GA  G GG G   GG GG  GG G
Sbjct: 42  GARGGRGGRGGARGGRGGSSGGRG 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,921
Number of Sequences: 5004
Number of extensions: 16727
Number of successful extensions: 299
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)