Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A05
(887 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 170 2e-43
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 170 2e-43
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 43 7e-05
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 28 1.5
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 6.2
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 8.2
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 26 8.2
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 170 bits (414), Expect = 2e-43
Identities = 79/117 (67%), Positives = 99/117 (84%)
Frame = +1
Query: 88 RGRGGSAGAKFRISLGLPVGAVINCADNTGCKESCM*SLSKXIKGRLNRLPAAGSGDMIV 267
RGRG ++G K+R++LGLPV A++NCADN+G K + S+ RLNRLPAA GDM++
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVF-GTGARLNRLPAASCGDMVL 61
Query: 268 ATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 438
ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 62 ATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITG 118
Score = 35.1 bits (77), Expect = 0.013
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 437 GPVAKECADLWPR 475
GPVAKECADLWPR
Sbjct: 118 GPVAKECADLWPR 130
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 170 bits (414), Expect = 2e-43
Identities = 79/117 (67%), Positives = 99/117 (84%)
Frame = +1
Query: 88 RGRGGSAGAKFRISLGLPVGAVINCADNTGCKESCM*SLSKXIKGRLNRLPAAGSGDMIV 267
RGRG ++G K+R++LGLPV A++NCADN+G K + S+ RLNRLPAA GDM++
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVF-GTGARLNRLPAASCGDMVL 61
Query: 268 ATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 438
ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 62 ATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITG 118
Score = 35.1 bits (77), Expect = 0.013
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 437 GPVAKECADLWPR 475
GPVAKECADLWPR
Sbjct: 118 GPVAKECADLWPR 130
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 42.7 bits (96), Expect = 7e-05
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 9/72 (12%)
Frame = +1
Query: 244 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 396
A GD +V VKK + R + A+++R + P RR DG ++ F+DNA V+
Sbjct: 31 ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90
Query: 397 VNNKGEMKGSAI 432
VN + E G+ I
Sbjct: 91 VNKECEPLGTRI 102
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 28.3 bits (60), Expect = 1.5
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Frame = -1
Query: 488 RLRQYAATDQHILWLQXPVMAEPFISPLLLT--MTPALSSKYINTPSRLLNGFRCLMTTA 315
RL + + + W + F+ ++ + ALSS+Y S L +T
Sbjct: 744 RLLTFQTNPEELEWQLFLDDTQAFVKSIIAVANLAKALSSEYTFQKSVLAGLSAATRSTK 803
Query: 314 GITFFRSSGLPFLTVATIMSPEPAAGSLFRRPLIXLDSDHIQDSLHPVLSAQLITAPTGR 135
+T SS T +++ +P P + R P L + S +++ LI +P
Sbjct: 804 DLTILLSSSARHYTESSLATPVPLMSPIARVPATPLSA--ALGSAAQSITSPLIMSPAAI 861
Query: 134 P 132
P
Sbjct: 862 P 862
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 277 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 387
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 425 EPFISPLLLTMTPALSSKYINTPS 354
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 233 LFRRPLIXLDSDHIQDSLHPVLSAQLITAPTGRPREIRNFAPAEPPRPLLDILL 72
L + PL DS+ + +L P L+ P RE ++ + PLL ILL
Sbjct: 26 LEKGPLPEYDSEE-ESTLPPYSDHALVNNPPNTHRENHSYGTTDNSSPLLIILL 78
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,584
Number of Sequences: 5004
Number of extensions: 52956
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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