Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A05
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 195 4e-50
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 195 4e-50
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 187 9e-48
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 52 6e-07
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 29 3.7
09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458 29 4.9
09_04_0046 - 14098660-14099400 29 6.5
05_01_0413 - 3253345-3253461,3253595-3253666,3253763-3253876,325... 29 6.5
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 6.5
02_02_0500 - 10993675-10994067,10994434-10995738 29 6.5
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 195 bits (475), Expect = 4e-50
Identities = 93/120 (77%), Positives = 107/120 (89%)
Frame = +1
Query: 79 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGCKESCM*SLSKXIKGRLNRLPAAGSGD 258
MSKRGRGGSAG KFR+SLGLPV A +NCADNTG K + S+ K IKGRLNRLP+A GD
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGD 59
Query: 259 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 438
M++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 60 MVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 119
Score = 33.1 bits (72), Expect = 0.30
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 437 GPVAKECADLWPR 475
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 195 bits (475), Expect = 4e-50
Identities = 93/120 (77%), Positives = 107/120 (89%)
Frame = +1
Query: 79 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGCKESCM*SLSKXIKGRLNRLPAAGSGD 258
MSKRGRGGSAG KFR+SLGLPV A +NCADNTG K + S+ K IKGRLNRLP+A GD
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGD 59
Query: 259 MIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 438
M++ATVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 60 MVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 119
Score = 33.1 bits (72), Expect = 0.30
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 437 GPVAKECADLWPR 475
GP+ KECADLWPR
Sbjct: 119 GPIGKECADLWPR 131
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 187 bits (456), Expect = 9e-48
Identities = 89/116 (76%), Positives = 103/116 (88%)
Frame = +1
Query: 91 GRGGSAGAKFRISLGLPVGAVINCADNTGCKESCM*SLSKXIKGRLNRLPAAGSGDMIVA 270
GRGGSAG KFR+SLGLPV A +NCADNTG K + S+ K IKGRLNRLP+A GDM++A
Sbjct: 22 GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMA 80
Query: 271 TVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 438
TVKKGKP+LRKKVMPAV++RQRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITG
Sbjct: 81 TVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITG 136
Score = 33.1 bits (72), Expect = 0.30
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 437 GPVAKECADLWPR 475
GP+ KECADLWPR
Sbjct: 136 GPIGKECADLWPR 148
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 52.0 bits (119), Expect = 6e-07
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Frame = +1
Query: 154 INCADNTGCKE-SCM*SLSKXIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAV 321
+ DN+G K C+ SL RL GD I+ +VK+ +P + K V+ V
Sbjct: 58 LKVVDNSGAKRVMCIQSLRGKKGARL--------GDTIIGSVKEAQPRGKVKKGDVVYGV 109
Query: 322 VIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITG 438
V+R R DG I F+DNA V+VNNKGE+ G+ + G
Sbjct: 110 VVRAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFG 148
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -1
Query: 167 SAQLITAPTGRPREIRNFAPAEPPRPLLDILLYQKF*KKQNLKEV 33
S+ I+A RE + PP PLLD + Y K +LKE+
Sbjct: 46 SSSSISASLSTEREAAEYHSQRPPTPLLDTVNYPIHMKNLSLKEL 90
>09_04_0525 + 18326429-18326780,18327870-18328068,18328597-18329458
Length = 470
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 194 IQDSLHPVLSAQLITAPTGRPREIRNFAPAEPPRPLL 84
++ SLH + A +I GR FAP E P+P+L
Sbjct: 367 VRPSLHLLPIASIIAPQMGRITSTSLFAPQEQPKPVL 403
>09_04_0046 - 14098660-14099400
Length = 246
Score = 28.7 bits (61), Expect = 6.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 153 NQLRRQHRVQRILYVIAVQGYQRSPEQTAGGRFRGHDCGH 272
N L + RV +++ V R+P TAG RGH GH
Sbjct: 3 NALTGKRRVAKVMTVDGATFRYRAPA-TAGAALRGHPAGH 41
>05_01_0413 -
3253345-3253461,3253595-3253666,3253763-3253876,
3254050-3254163,3254420-3254520,3254616-3254694,
3254789-3254863,3254955-3255017,3255281-3255361,
3255449-3255574,3255898-3256022,3256722-3256839,
3257420-3257554,3258029-3258175,3259016-3259321
Length = 590
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 179 HPVLSA---QLITAPTGRPREIRNFAPAEPPRPLLDILLY 69
HP LS +L A +PRE P PP+PLL +L +
Sbjct: 537 HPTLSEVLDELFKAAKLQPREGPERKPKHPPQPLLKVLSF 576
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 393 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 256
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 6.5
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -1
Query: 437 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 270
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 269 ATIMSPEPAA 240
+ EP A
Sbjct: 285 FKPIDEEPMA 294
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,596,153
Number of Sequences: 37544
Number of extensions: 403601
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -