Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A03
         (890 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.63 
AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical...    30   1.9  
AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical...    30   1.9  
Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical p...    29   3.4  
L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    29   4.5  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    28   7.8  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 602 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 724
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>AC024859-11|AAK29981.1|  933|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15a protein.
          Length = 933

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 688 FLPSGSVALSHS-SRCRYLSSVXVVRSKLGCVHXPPVQPDRCALSGTIVLSQPGKXXLSP 864
           F+   S+A+  S  RC+ L+++ V   KL  V  P +Q  +  +        PG   L P
Sbjct: 709 FIRDQSIAVDQSLRRCKALANIMVTMKKLAMVQDPSIQRRKKHVERADSAGAPGSPRLPP 768

Query: 865 LAAATGT 885
             +   T
Sbjct: 769 KPSVAQT 775


>AC024859-10|ABA00158.1|  832|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.15b protein.
          Length = 832

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +1

Query: 688 FLPSGSVALSHS-SRCRYLSSVXVVRSKLGCVHXPPVQPDRCALSGTIVLSQPGKXXLSP 864
           F+   S+A+  S  RC+ L+++ V   KL  V  P +Q  +  +        PG   L P
Sbjct: 608 FIRDQSIAVDQSLRRCKALANIMVTMKKLAMVQDPSIQRRKKHVERADSAGAPGSPRLPP 667

Query: 865 LAAATGT 885
             +   T
Sbjct: 668 KPSVAQT 674


>Z80215-14|CAI79138.1|  662|Caenorhabditis elegans Hypothetical
           protein C36B1.12c protein.
          Length = 662

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-13|CAI79137.1|  640|Caenorhabditis elegans Hypothetical
           protein C36B1.12b protein.
          Length = 640

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>Z80215-12|CAB02277.1|  652|Caenorhabditis elegans Hypothetical
           protein C36B1.12a protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -3

Query: 525 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 421
           +RQ      +  + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425


>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +1

Query: 541 PPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSH 720
           PP ++ +     Q  R+P    ++   P G      P   LP +   +  L + SV  S 
Sbjct: 476 PPQQNRQQGVPPQFQRSP----QFMIGPDGQRYAH-PYMQLPNSNQRARILNTSSVQPSE 530

Query: 721 SSRCRY--LSSVXVVRSKLGCVHXPPVQPDRCALSGTIVLSQPG 846
             R R   + ++ +  ++L     PP QP   AL G +   +PG
Sbjct: 531 EVRNRLVKIEAMAMNMAQLNPPRPPPPQPPHRALQGELQFLRPG 574


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +1

Query: 541 PPDEHHKNRRSSQRWRNPTGL*RYQAFPPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSH 720
           PP ++ +     Q  R+P    ++   P G      P   LP +   +  L + SV  S 
Sbjct: 666 PPQQNRQQGVPPQFQRSP----QFMIGPDGQRYAH-PYMQLPNSNQRARILNTSSVQPSE 720

Query: 721 SSRCRY--LSSVXVVRSKLGCVHXPPVQPDRCALSGTIVLSQPG 846
             R R   + ++ +  ++L     PP QP   AL G +   +PG
Sbjct: 721 EVRNRLVKIEAMAMNMAQLNPPRPPPPQPPHRALQGELQFLRPG 764


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -2

Query: 778 HSPAWSERXTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPGIF 605
           H  AW+ R  P    ++ +  K  ++ K E + G     G+E+       +G+T   F
Sbjct: 96  HDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRNSF 153


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 416 GGNTVIHRIRGITQERTCEQKASKRPGTVK 505
           GG +V +R   + Q+++   ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,049,242
Number of Sequences: 27780
Number of extensions: 361623
Number of successful extensions: 987
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)