Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_A02
(901 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.17
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 28 1.6
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 1.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 28 2.1
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.7
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 4.8
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 6.3
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 26 6.3
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 26 8.4
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 26 8.4
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 8.4
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 31.5 bits (68), Expect = 0.17
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +3
Query: 474 NDQQFFFVNGQIISAVSIEEICRE--IDDIFKSIDRLASATSTLRNRKPDVVQCSISTGE 647
N+ +FVNG S ++ + +E ID K L ++ KP + G
Sbjct: 230 NNTSKYFVNGVESSFSAVSNLLKEKGIDLNHKRFLILQGEVESIAQMKPRAISEG-DDGL 288
Query: 648 LSFDDTIDQIDEEKIDQCIEEAFEELSGSSQVCARMKT 761
L + + I I K IEE +ELS S +CA ++
Sbjct: 289 LEYLEDI--IGTSKYKPIIEENMQELSNSDDICAEKES 324
Score = 25.8 bits (54), Expect = 8.4
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +3
Query: 279 LDEXRTE-EDNEPAMTTMLSALDLKKTTFDSAQLLKKVRRKVARQLSD-KSIIDYNDFIR 452
L++ TE + P+ +S L L + D +L+ R++ + SD KSI + N+ R
Sbjct: 835 LNQRFTEISERIPSAELEISKLQLDVSACD--RLVAGEERRILQLKSDLKSIRNNNERKR 892
Query: 453 NLQNNEAN-DQQFFFVN 500
NLQN +N D++ +N
Sbjct: 893 NLQNKISNMDKEVEAIN 909
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 498 NGQIISAVSIEEICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQI 677
+ QII A+ + + E+D I +S + S TS +R V+ C+ S G SF ++
Sbjct: 527 SSQIIEALRLHKPLEELDIILQSEEIQNSETSAVRL----VMSCAYSLGSRSFSHALNVF 582
Query: 678 DE 683
++
Sbjct: 583 EK 584
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/105 (21%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Frame = +3
Query: 393 RKVARQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSID 572
RKV + L +K +ID N + + EA++Q + A+S +I + I++ +
Sbjct: 110 RKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHK 169
Query: 573 RLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDE-EKIDQCI 704
R+ + + + +T ++ D DE EK ++C+
Sbjct: 170 RMRENIWAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.9 bits (59), Expect = 2.1
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Frame = +3
Query: 342 DLKKTTFDSAQLLKKVRRKV--ARQLSDKSIIDYNDFIRNLQNN-----EANDQQFFFVN 500
D +T D+ L+ K+ + A Q+S++ I D +++ + Q ++ + Q +
Sbjct: 451 DWDRTLVDNGALISKLYTETVEAEQMSNR-IDDGLEYVSSSQQELFKLLDSYETQLETFD 509
Query: 501 GQIISAVSIEE--ICREIDDIFKSIDRLASATSTLRNRKPDVVQCSISTGEL 650
G+ SA+++E DDI +DRL T+ N+ D + S E+
Sbjct: 510 GRATSALNVERERAFGVADDILSRLDRLGEDLGTVINQMNDFSKPDDSISEI 561
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/99 (20%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Frame = +3
Query: 411 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 590
L+D ++ DY + N NN N QQ V+ + V + + + S+ +S+
Sbjct: 207 LADSNMEDYTRAVMNYINNSENTQQ-ASVSPEESQLVMLSRFVFSVASGWVSVLMNSSSA 265
Query: 591 STLRNRK-PDVVQCSISTGELSFDDTIDQIDEEKIDQCI 704
N + P + ++ +G ++FD+ + + + Q +
Sbjct: 266 HQSNNLEFPSSISGNVESGNVAFDEFLSLLHAGNLVQAM 304
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 345 LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQ 461
LK+T +LLKK+ + + + SI+ Y +IR+++
Sbjct: 1739 LKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRDIE 1777
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 669 DQIDEEKIDQCIEEAFEELSGSSQVCARMKTAR 767
+Q+ +EKI + + ++GSSQV + KT +
Sbjct: 1020 NQVIDEKIQYSMSRFLDVVTGSSQVLQKFKTKK 1052
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 710 SFRRVEWKFTSVCQNENSQESVTTLVKRFTSLLNSPTVQ 826
SF EW VC N +E+ + V R T L+ PT Q
Sbjct: 29 SFPVREWSIKLVCLNPQGEETDASFVDRVTYKLH-PTFQ 66
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 570 DRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDEEKIDQCIE 707
++L S+ T R++ ++ + EL D+ID I EKID C E
Sbjct: 288 EKLLSSLETERSKLSSLL-LKMQEKELEGSDSIDPILLEKIDVCEE 332
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 522 SIEEICREIDDIFKSIDRLASATSTLR-NRKPDVVQCSISTGELSFDDTIDQIDEEKIDQ 698
S+ R + + KS++ A A T + R+ ++++ + + DD +++ DEE+ D+
Sbjct: 105 SMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMDDALEEDDEEEADE 164
Query: 699 CIEEAFEEL 725
+ + +E+
Sbjct: 165 LVNKVLDEI 173
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 8.4
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = +3
Query: 336 ALD--LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN---DQQFFFVN 500
ALD KK + LLK+++ K K +++ R ++ A D ++ +
Sbjct: 617 ALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKR--EWSKIWRQIEKKNAQAAFDDRYCRIE 674
Query: 501 GQIISAVSIEEICREIDDIFK 563
G+ +S I R+IDDI++
Sbjct: 675 GRDRRGLSYSRILRDIDDIYQ 695
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,310
Number of Sequences: 5004
Number of extensions: 43662
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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