Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A02
         (901 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    29   0.15 
AY341191-1|AAR13755.1|  191|Anopheles gambiae GNBP B1 protein.         24   7.2  
AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.          23   9.6  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 29.5 bits (63), Expect = 0.15
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +3

Query: 552 DIFKSIDRLASATSTLRNRKPDVVQCSISTGELSFDDTIDQIDEEKIDQCIEEAFEELSG 731
           +I K+ DRL +A   L++ K DVV        L+ +      ++ K+D  I +  +E+ G
Sbjct: 259 EIQKAQDRLKNAQKALKDAKKDVVTAKDEKSVLATEHQQLLREKTKLDLTISDLSDEVQG 318

Query: 732 SSQ 740
            ++
Sbjct: 319 DNK 321


>AY341191-1|AAR13755.1|  191|Anopheles gambiae GNBP B1 protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 639 TGELSFDDTIDQIDEEK 689
           +GEL F+DT D  D EK
Sbjct: 41  SGELIFEDTFDFFDFEK 57


>AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 654 FDDTIDQIDEEKIDQCIEEAFEELSGSSQVCARMK 758
           FD     I   K+DQ +++  EEL G     A+ K
Sbjct: 364 FDICEQFIGRGKVDQAVKKQLEELRGKFATFAKGK 398


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,106
Number of Sequences: 2352
Number of extensions: 10688
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97160985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)